View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11421_high_7 (Length: 482)
Name: NF11421_high_7
Description: NF11421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11421_high_7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 18 - 482
Target Start/End: Complemental strand, 29626168 - 29625705
Alignment:
| Q |
18 |
tactccctatacttgtttcctattatacaatgatactcctccatcaatggaattagaaattttcataatcaaacttaggccaattatataagcaagcaat |
117 |
Q |
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| T |
29626168 |
tactccctatacttgtttcctattatacaatgatactcctccatcaaaggaattagaaattttcataatcaaacttaggccaattatataagcaagcaat |
29626069 |
T |
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| Q |
118 |
atgcaaaatccaaatcagctcatcaatttttccaacacttccccatgttaatttttaaatagtccatagcagcacatcacaattcgcagcaaccttgaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29626068 |
atgcaaaatccaaatcagctcatcaatttttccaacacttccccatgttaatttttaaatagtccatagcagcacatcacaattcgcagcaaccttgaaa |
29625969 |
T |
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| Q |
218 |
cacatcagatcaaaaataatgtgtccagtactccaggcttgcttagacaaatcaaaacacaaatcgatcttgctatcatccatgggataataaattagaa |
317 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
29625968 |
cacatcagatcaaaaataatttgtccagtactccaggcttgcttagac-aatcaaaacacaaatcgatcttgctatcatccgtgggatgataaattagaa |
29625870 |
T |
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| Q |
318 |
tcagtacctcattaggtcccttcctattgcactgttgtcaccacaaaatacctctccgtaaaacacattgatacagctgacaccctcctaatccaatcct |
417 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
29625869 |
tcagtacctcattaggtcccttcctattgcactcttgtcaccacaaaatacctctccgtgaaacacattgatacagctgacaccctccgaatccaatcct |
29625770 |
T |
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| Q |
418 |
tgcatatcagattgctacaaactgtttcaattttctaccttccatatttgatccttgctatgtat |
482 |
Q |
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| T |
29625769 |
tgcatatcagattgctacaaactgtttcaattttctaccttccatatttgatccttgctatgtat |
29625705 |
T |
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