View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11421_low_1 (Length: 769)

Name: NF11421_low_1
Description: NF11421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11421_low_1
NF11421_low_1
[»] chr2 (1 HSPs)
chr2 (51-719)||(44693438-44694109)


Alignment Details
Target: chr2 (Bit Score: 568; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 51 - 719
Target Start/End: Original strand, 44693438 - 44694109
Alignment:
Q  51 ttctctaggttgtttgtgctgctgttagtgtgcgtttgttgtgagctgtgtgggtaggcctagtagtttttatcctgtttttggtgctcctgtttagcag 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44693438 ttctctaggttgtttgtgctgctgttagtgtgcgtttgttgtgagctgtgtgggtaggcctagtagtttttatcctgtttttggtgctcctgtttagcag 44693537  T
Q  151 tcagctgtgtttgttgctgctgcgtcatgagctttggccctgcgctgtttggcaggccttttaggggnnnnnnnnn-atcgagtggtgggcagtttgagt 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||    
T  44693538 tcagctgtgtttgttgctgctgcgtcatgagctttggccctgcgctgtttggcaggccttttagggtttttttttttatcgagtggtgggcagtttgagt 44693637  T
Q  250 gcttttagttgttttgcatcctttgtactctttttcctcctttcgcggactgagtgcttctcgtgctagctctgcttaataatattagccgtttcnnnnn 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||         
T  44693638 gcttttagttgttttgcatcctttgtactctttttcctcctttcgcgggctgagtgcttctcgtgctagctctgcttaataatattagccgtttcaaaaa 44693737  T
Q  350 nnnnnn-tcaacattatgatttaagatttaagtgtaatgaacattatgaaaatttaagattaaaattgtgaataaggacaacaagggtaaaaaatgcaat 448  Q
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44693738 aaaaaaatcaatattatgatttaagatttaagtgtaatgaacattatgaaaatttaagattaaaattgtgaataaggacaacaagggtaaaaaatgcaat 44693837  T
Q  449 taaaaagaggtaaattagtctattatctatttaaattgattttttctaagtgtccgattttcaaagaccaacgatcaggaacaaaggaagttctagtcat 548  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44693838 caaaaagaggtaaattagtctattatctatttaaattgattttttctaagtgtccgattttcaaagaccaacgatcaggaacaaaggaagttctagtcat 44693937  T
Q  549 tagcgaacttgtgataatattaaattatctttggggtgggtagctcaactatttgtgttaagggtctaggaagttgga-gacaccagattcaaactctgg 647  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  44693938 tagcgaacttgtgataatattaaattatctttggggtgggtagctcaactatttgtgttaagggactaggaagttggaggacaccagattcaaactctgg 44694037  T
Q  648 tgaactataacaactacgtaattactaattttcaaaaataattattgatcgtccaagaaaaattctttagac 719  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44694038 tgaactataacaactacgtaattactaattttcaaaaataattattgatcgtccaagaaaaattctttagac 44694109  T

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