View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11421_low_10 (Length: 360)

Name: NF11421_low_10
Description: NF11421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11421_low_10
NF11421_low_10
[»] scaffold0373 (2 HSPs)
scaffold0373 (9-191)||(14002-14184)
scaffold0373 (194-347)||(13813-13967)
[»] chr4 (17 HSPs)
chr4 (9-191)||(6826089-6826271)
chr4 (194-347)||(6826306-6826460)
chr4 (194-346)||(13505287-13505439)
chr4 (194-346)||(38649950-38650102)
chr4 (229-306)||(35425589-35425666)
chr4 (200-306)||(16469617-16469722)
chr4 (200-291)||(42562676-42562767)
chr4 (194-284)||(634078-634168)
chr4 (9-111)||(12098252-12098354)
chr4 (194-299)||(41969178-41969284)
chr4 (227-284)||(40451462-40451519)
chr4 (205-306)||(41969359-41969459)
chr4 (194-259)||(44098830-44098895)
chr4 (234-270)||(13523402-13523438)
chr4 (53-111)||(46692796-46692855)
chr4 (53-111)||(35417447-35417505)
chr4 (205-312)||(39463476-39463584)
[»] chr3 (12 HSPs)
chr3 (194-346)||(16256221-16256373)
chr3 (194-346)||(2811306-2811458)
chr3 (193-347)||(7627210-7627363)
chr3 (221-346)||(8693978-8694103)
chr3 (221-346)||(9045865-9045990)
chr3 (194-324)||(47829738-47829869)
chr3 (194-306)||(13330378-13330490)
chr3 (200-291)||(30229004-30229094)
chr3 (200-300)||(16292759-16292859)
chr3 (224-306)||(25157702-25157785)
chr3 (200-312)||(19195887-19195999)
chr3 (206-259)||(39688265-39688318)
[»] chr2 (13 HSPs)
chr2 (200-346)||(11807660-11807806)
chr2 (230-346)||(15424206-15424321)
chr2 (194-335)||(31118988-31119131)
chr2 (207-306)||(37939671-37939770)
chr2 (200-346)||(18206582-18206732)
chr2 (205-284)||(27756999-27757078)
chr2 (200-346)||(20931120-20931270)
chr2 (200-346)||(27333094-27333243)
chr2 (206-259)||(940066-940119)
chr2 (214-249)||(31627162-31627197)
chr2 (53-111)||(32522431-32522490)
chr2 (194-259)||(5308123-5308188)
chr2 (222-258)||(27757173-27757209)
[»] chr7 (19 HSPs)
chr7 (197-346)||(25770212-25770362)
chr7 (194-343)||(15826136-15826285)
chr7 (194-306)||(13608899-13609011)
chr7 (194-306)||(22518041-22518153)
chr7 (195-346)||(39561437-39561588)
chr7 (197-346)||(25775783-25775929)
chr7 (194-301)||(12345986-12346093)
chr7 (194-346)||(6715744-6715899)
chr7 (207-291)||(24576321-24576405)
chr7 (200-299)||(5241566-5241665)
chr7 (200-346)||(21065803-21065951)
chr7 (205-299)||(2413178-2413271)
chr7 (226-339)||(12625368-12625484)
chr7 (198-259)||(13553271-13553332)
chr7 (234-270)||(9652377-9652413)
chr7 (270-337)||(23555472-23555539)
chr7 (194-256)||(16728528-16728590)
chr7 (194-256)||(17705600-17705662)
chr7 (194-247)||(31011017-31011070)
[»] chr5 (8 HSPs)
chr5 (194-346)||(11799481-11799633)
chr5 (242-340)||(24211099-24211197)
chr5 (194-335)||(22552816-22552947)
chr5 (205-306)||(1817845-1817945)
chr5 (277-342)||(8431278-8431343)
chr5 (205-306)||(11478902-11479003)
chr5 (194-259)||(27348111-27348176)
chr5 (254-306)||(1817725-1817777)
[»] chr1 (12 HSPs)
chr1 (195-335)||(24965481-24965623)
chr1 (195-335)||(20007290-20007432)
chr1 (196-335)||(32646230-32646368)
chr1 (200-339)||(3377361-3377500)
chr1 (200-263)||(43784831-43784894)
chr1 (206-263)||(49033198-49033255)
chr1 (205-259)||(28540847-28540901)
chr1 (205-259)||(50907740-50907794)
chr1 (261-306)||(12024373-12024418)
chr1 (230-267)||(23348891-23348928)
chr1 (206-259)||(28443458-28443511)
chr1 (43-111)||(39453402-39453470)
[»] scaffold0046 (1 HSPs)
scaffold0046 (195-335)||(74802-74944)
[»] chr6 (7 HSPs)
chr6 (220-346)||(31020878-31021008)
chr6 (194-306)||(17754923-17755035)
chr6 (17-111)||(2298342-2298436)
chr6 (270-346)||(19244289-19244365)
chr6 (224-346)||(18790768-18790887)
chr6 (277-346)||(24122558-24122627)
chr6 (47-111)||(31131332-31131396)
[»] chr8 (8 HSPs)
chr8 (194-306)||(28838294-28838406)
chr8 (194-306)||(9238625-9238736)
chr8 (194-346)||(16995721-16995872)
chr8 (200-306)||(26489164-26489270)
chr8 (194-346)||(22721503-22721655)
chr8 (200-259)||(14095085-14095144)
chr8 (194-249)||(16003281-16003336)
chr8 (206-301)||(38187562-38187656)
[»] scaffold0010 (1 HSPs)
scaffold0010 (194-346)||(34246-34398)
[»] scaffold0408 (1 HSPs)
scaffold0408 (200-259)||(5427-5486)
[»] scaffold1212 (1 HSPs)
scaffold1212 (205-291)||(1282-1369)
[»] scaffold0458 (1 HSPs)
scaffold0458 (43-111)||(10204-10272)


Alignment Details
Target: scaffold0373 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 9 - 191
Target Start/End: Complemental strand, 14184 - 14002
Alignment:
Q  9 cttgcttttattttcctgcacaaatggatggagcaaggcacatgaagcataattggtataattacattaaattatagcttttccttagataatttgcaaa 108  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14184 cttgcttttattttcctgcacaaatgggtagagcaaggcacatgaagcataattggtataattacattaaattatagcttttccttagataatttgcaaa 14085  T
Q  109 acacttaaatatcacttttgaacacttatcaacggacattgtgtcaattcctactcattcaacaacacttaaattttggcagt 191  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  14084 acacttaaatatcacttttgaacacttatcaacggatattgtgtcaattcctactcattcaacaacgcttaaattttggcagt 14002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 194 - 347
Target Start/End: Complemental strand, 13967 - 13813
Alignment:
Q  194 aaactaactacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaa-caaacaaattttcatttagacattttatcaaat 292  Q
    ||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13967 aaactaactacgatcaacaatagcaaatcaatttctaactaatttcatcattaacaatccaaaaaaacaaacaaattttcatttagacattttatcaaat 13868  T
Q  293 acctagagtccaactttcaatctacttaaaatcaaacaatttctaaaccctaaat 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13867 acctagagtccaactttcaatctacttaaaatcaaacaatttctaaaccctaaat 13813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 9 - 191
Target Start/End: Original strand, 6826089 - 6826271
Alignment:
Q  9 cttgcttttattttcctgcacaaatggatggagcaaggcacatgaagcataattggtataattacattaaattatagcttttccttagataatttgcaaa 108  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6826089 cttgcttttattttcctgcacaaatgggtagagcaaggcacatgaagcataattggtataattacattaaattatagcttttccttagataatttgcaaa 6826188  T
Q  109 acacttaaatatcacttttgaacacttatcaacggacattgtgtcaattcctactcattcaacaacacttaaattttggcagt 191  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  6826189 acacttaaatatcacttttgaacacttatcaacggatattgtgtcaattcctactcattcaacaacgcttaaattttggcagt 6826271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 194 - 347
Target Start/End: Original strand, 6826306 - 6826460
Alignment:
Q  194 aaactaactacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaa-aacaaacaaattttcatttagacattttatcaaat 292  Q
    ||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6826306 aaactaactacgatcaacaatagcaaatcaatttctaactaatttcatcattaacaatccaaaaaaacaaacaaattttcatttagacattttatcaaat 6826405  T
Q  293 acctagagtccaactttcaatctacttaaaatcaaacaatttctaaaccctaaat 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6826406 acctagagtccaactttcaatctacttaaaatcaaacaatttctaaaccctaaat 6826460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 194 - 346
Target Start/End: Original strand, 13505287 - 13505439
Alignment:
Q  194 aaactaactacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaata 293  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||| |    
T  13505287 aaactaactataatcaacaataacgaaccaatttctaactaatttcatcattaacaatcctaaaaacaaacaaaatttcattgagacattttatcaaaca 13505386  T
Q  294 cctagagtccaactttcaatctacttaaaatcaaacaatttctaaaccctaaa 346  Q
    ||||||||| ||||||||||| |||||||||| ||||||||||||||||||||    
T  13505387 cctagagtctaactttcaatcaacttaaaatctaacaatttctaaaccctaaa 13505439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 194 - 346
Target Start/End: Complemental strand, 38650102 - 38649950
Alignment:
Q  194 aaactaactacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaata 293  Q
    |||||||||| |||||||| ||||||||  ||||| |||||||||||||||||||| |  ||||  || |  ||  |||||| |||||||||| |||| |    
T  38650102 aaactaactataatcaacattaacaaacatatttcaaactaatttcatcattaacattgaaaaactcataagaaaattcattgagacattttaacaaaca 38650003  T
Q  294 cctagagtccaactttcaatctacttaaaatcaaacaatttctaaaccctaaa 346  Q
    |||||||||||  |||||||| |||||||||||||||||||| ||| ||||||    
T  38650002 cctagagtccatatttcaatcaacttaaaatcaaacaatttcaaaatcctaaa 38649950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 229 - 306
Target Start/End: Original strand, 35425589 - 35425666
Alignment:
Q  229 taactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaatacctagagtccaac 306  Q
    |||||||||||| |||||||||| ||||||||||||| ||||| ||| ||||||||||||||| ||||||||| ||||    
T  35425589 taactaatttcaccattaacaatgcaaaaaacaaacacatttttattgagacattttatcaaacacctagagttcaac 35425666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 306
Target Start/End: Complemental strand, 16469722 - 16469617
Alignment:
Q  200 actacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaatacctaga 299  Q
    |||| ||| |||| |||||| |||||||||||||||| ||||||||||| || |||| | ||||| | ||||||| |||||||||| ||||| |||||||    
T  16469722 actataataaacattaacaatccaatttctaactaatgtcatcattaac-atgcaaatatcaaactatttttcatatagacattttgtcaaacacctaga 16469624  T
Q  300 gtccaac 306  Q
    || ||||    
T  16469623 gttcaac 16469617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 291
Target Start/End: Original strand, 42562676 - 42562767
Alignment:
Q  200 actacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaa 291  Q
    |||| |||||||| |||| |||||  ||||||||||||||||||||| |||||||||||||||  |||   ||||| |||||||||| ||||    
T  42562676 actataatcaacattaacgaaccatattctaactaatttcatcattagcaatccaaaaaacaacaaaaaaatcattgagacattttaccaaa 42562767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 284
Target Start/End: Original strand, 634078 - 634168
Alignment:
Q  194 aaactaactacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattt 284  Q
    ||||||||||  ||||||| ||||||||  |  |||||||||||  ||||||||||||||||||||||||  || | ||||| ||||||||    
T  634078 aaactaactatcatcaacattaacaaacatagctctaactaattatatcattaacaatccaaaaaacaaaataaatatcattgagacattt 634168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 111
Target Start/End: Original strand, 12098252 - 12098354
Alignment:
Q  9 cttgcttttattttcctgcacaaatggatggagcaaggcacatgaagcataattggtataattacattaaattatagcttttccttagataatttgcaaa 108  Q
    ||||||| ||||||||||||||| ||| | ||| ||||||||| |||||||||||| ||   | ||| ||||| |||||||||| | ||||  |||||||    
T  12098252 cttgcttgtattttcctgcacaattgggtagagtaaggcacataaagcataattgggatttattcatcaaattgtagcttttccatggatatcttgcaaa 12098351  T
Q  109 aca 111  Q
    |||    
T  12098352 aca 12098354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 299
Target Start/End: Original strand, 41969178 - 41969284
Alignment:
Q  194 aaactaactacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagaca-ttttatcaaat 292  Q
    ||||| |||| |||||||| || ||| ||||||||||||||| |||||||||||||  | ||||| |||  ||  ||||||| ||||| ||||||||||     
T  41969178 aaacttactataatcaacattatcaatccaatttctaactaagttcatcattaacatgcaaaaaatcaattaatatttcattgagacatttttatcaaac 41969277  T
Q  293 acctaga 299  Q
    |||||||    
T  41969278 acctaga 41969284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 40451519 - 40451462
Alignment:
Q  227 tctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattt 284  Q
    ||||||||||| |||||||||||||||||||||||||  || | ||||| ||||||||    
T  40451519 tctaactaattacatcattaacaatccaaaaaacaaaataaatatcattgagacattt 40451462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 306
Target Start/End: Original strand, 41969359 - 41969459
Alignment:
Q  205 aatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaatacctagagtcca 304  Q
    |||||||| |||||| ||||||||||||| ||||||||||||| |  | ||||| |||  || |||||||| ||||||||||| ||| | ||||||| ||    
T  41969359 aatcaacactaacaatccaatttctaact-atttcatcattaatatgcaaaaaatcaattaatttttcattgagacattttatgaaacagctagagttca 41969457  T
Q  305 ac 306  Q
    ||    
T  41969458 ac 41969459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 259
Target Start/End: Complemental strand, 44098895 - 44098830
Alignment:
Q  194 aaactaactacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaa 259  Q
    ||||| |||| |||||||| ||||||  ||||||||||||||||| |||||||||| | |||||||    
T  44098895 aaactcactataatcaacattaacaattcaatttctaactaatttaatcattaacattgcaaaaaa 44098830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 13523402 - 13523438
Alignment:
Q  234 aatttcatcattaacaatccaaaaaacaaacaaattt 270  Q
    |||||||||||||||||| ||||||||||||||||||    
T  13523402 aatttcatcattaacaatgcaaaaaacaaacaaattt 13523438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 111
Target Start/End: Original strand, 46692796 - 46692855
Alignment:
Q  53 aagcataattggtataattacatt-aaattatagcttttccttagataatttgcaaaaca 111  Q
    |||||||| |||||||| |||| | |||| ||||||||||||||||||| ||||||||||    
T  46692796 aagcataaatggtataaatacactcaaatgatagcttttccttagataacttgcaaaaca 46692855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 111
Target Start/End: Original strand, 35417447 - 35417505
Alignment:
Q  53 aagcataattggtataattacattaaattatagcttttccttagataatttgcaaaaca 111  Q
    |||||||| ||||  |||||||  |||| || |||||||||||||||||||||||||||    
T  35417447 aagcataaatggtcaaattacaacaaatgattgcttttccttagataatttgcaaaaca 35417505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 312
Target Start/End: Complemental strand, 39463584 - 39463476
Alignment:
Q  205 aatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaa-aaaacaaacaaattttcatttagacattttatcaaatacctagagtcc 303  Q
    |||||| | ||||||||||  ||||||||||||| || ||| ||||||||| ||||||||  ||||  |||| |||||||||| |||| || ||| || |    
T  39463584 aatcaatattaacaaaccatattctaactaatttgataattcacaatccaaaaaaacaaaataattaccattgagacattttaccaaacacatagtgtgc 39463485  T
Q  304 aactttcaa 312  Q
    || ||||||    
T  39463484 aattttcaa 39463476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 194 - 346
Target Start/End: Original strand, 16256221 - 16256373
Alignment:
Q  194 aaactaactacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaata 293  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |    
T  16256221 aaactaactataatcaacactaacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcattgagaaattttatcaaaca 16256320  T
Q  294 cctagagtccaactttcaatctacttaaaatcaaacaatttctaaaccctaaa 346  Q
    |||||||| || ||||||||| |||||||||||||||||||| ||||||||||    
T  16256321 cctagagttcatctttcaatcaacttaaaatcaaacaatttcaaaaccctaaa 16256373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 194 - 346
Target Start/End: Original strand, 2811306 - 2811458
Alignment:
Q  194 aaactaactacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaata 293  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||| |||| |||||||||| |    
T  2811306 aaactaactataatcaaccataacaaaccaatttctaactaatttcatctttaacaatccaaaaaacaaacaaaattttattgagacgttttatcaaaca 2811405  T
Q  294 cctagagtccaactttcaatctacttaaaatcaaacaatttctaaaccctaaa 346  Q
    ||||||||||||||||||||| |||||||||| |||||||| |||||||||||    
T  2811406 cctagagtccaactttcaatcaacttaaaatctaacaatttttaaaccctaaa 2811458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 193 - 347
Target Start/End: Complemental strand, 7627363 - 7627210
Alignment:
Q  193 aaaactaactacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaat 292  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||| || |||||||||||| ||     
T  7627363 aaaactaactataatcaacaataacaaaccaatttttaactaatttcatcattaacaatccaaaaaacaaaccaaatttcgttgagacattttatcgaac 7627264  T
Q  293 acctagagtccaactttcaatctacttaaaatcaaacaatttctaaaccctaaat 347  Q
    ||||||||| |||||||||||| |||||||||| |||||||||||||||||||||    
T  7627263 acctagagt-caactttcaatcaacttaaaatctaacaatttctaaaccctaaat 7627210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 221 - 346
Target Start/End: Original strand, 8693978 - 8694103
Alignment:
Q  221 ccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaatacctagagtccaactttcaatctactta 320  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||| || ||    
T  8693978 ccaatttctagctaatttcatcattaacaatgcaaaaaacaaacaaattttcattaagacattttatcaaacacctagagtgcaactttcaatcaacata 8694077  T
Q  321 aaatcaaacaatttctaaaccctaaa 346  Q
    ||||| ||||||||||||||||||||    
T  8694078 aaatctaacaatttctaaaccctaaa 8694103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 221 - 346
Target Start/End: Original strand, 9045865 - 9045990
Alignment:
Q  221 ccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaatacctagagtccaactttcaatctactta 320  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||| || ||    
T  9045865 ccaatttctagctaatttcatcattaacaatgcaaaaaacaaacaaattttcattaagacattttatcaaacacctagagtgcaactttcaatcaacata 9045964  T
Q  321 aaatcaaacaatttctaaaccctaaa 346  Q
    ||||| ||||||||||||||||||||    
T  9045965 aaatctaacaatttctaaaccctaaa 9045990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 194 - 324
Target Start/End: Original strand, 47829738 - 47829869
Alignment:
Q  194 aaactaactacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatcc-aaaaaacaaacaaattttcatttagacattttatcaaat 292  Q
    |||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||| |||||||     
T  47829738 aaactaactataatcaacattaacaaaccaatttttaactaatttcatcattaacaatccaaaaaaacaaataaattttcattgagacattatatcaaac 47829837  T
Q  293 acctagagtccaactttcaatctacttaaaat 324  Q
    ||||||||| |||||||||||| || ||||||    
T  47829838 acctagagtgcaactttcaatcaacataaaat 47829869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 194 - 306
Target Start/End: Complemental strand, 13330490 - 13330378
Alignment:
Q  194 aaactaactacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaata 293  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |  || ||| ||||||||||||||| ||||||||||||||| |    
T  13330490 aaactaactataatcaacattaacaaaccaatttctaactaatttcatcattaacactaaaacaaataaacaaattttcattgagacattttatcaaaca 13330391  T
Q  294 cctagagtccaac 306  Q
    |||||||| ||||    
T  13330390 cctagagttcaac 13330378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 200 - 291
Target Start/End: Original strand, 30229004 - 30229094
Alignment:
Q  200 actacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaa-caaacaaattttcatttagacattttatcaaa 291  Q
    |||| |||||||| |||||| ||||||||||||||||||||||||||| ||| ||||||| ||||| |||||||||| |||||||||||||||    
T  30229004 actataatcaacattaacaatccaatttctaactaatttcatcattaa-aatgcaaaaaatcaaac-aattttcattgagacattttatcaaa 30229094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 300
Target Start/End: Original strand, 16292759 - 16292859
Alignment:
Q  200 actacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaatacctaga 299  Q
    |||| |||||||| |||||| |||||||||||||||||| ||||||||||  | | | |  |||||| |||| ||| ||||||||||||||| |||||||    
T  16292759 actagaatcaacattaacaatccaatttctaactaattttatcattaacatgcaagatataaaacaatttttgattgagacattttatcaaacacctaga 16292858  T
Q  300 g 300  Q
    |    
T  16292859 g 16292859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 306
Target Start/End: Original strand, 25157702 - 25157785
Alignment:
Q  224 atttctaactaatttcatcattaacaatccaaaaaacaaacaa-attttcatttagacattttatcaaatacctagagtccaac 306  Q
    ||||||||||||||||||||||||||  | |||   |||||||  |||||||||||||||||||||||| ||||||||| ||||    
T  25157702 atttctaactaatttcatcattaacatgcaaaatttcaaacaattttttcatttagacattttatcaaacacctagagttcaac 25157785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 200 - 312
Target Start/End: Complemental strand, 19195999 - 19195887
Alignment:
Q  200 actacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaatacctaga 299  Q
    |||| |||||||| ||||||||||  |||||| |||||||||||||| ||||  |||||||||| |||  |||||| |||||| |||  ||| || ||||    
T  19195999 actataatcaacattaacaaaccatattctaaataatttcatcattagcaatataaaaaacaaaaaaaaattcattgagacatattacaaaacacataga 19195900  T
Q  300 gtccaactttcaa 312  Q
    || ||| ||||||    
T  19195899 gtgcaattttcaa 19195887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 39688265 - 39688318
Alignment:
Q  206 atcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaa 259  Q
    ||||||| ||||||||  |  ||||||||||| |||||||||||||||||||||    
T  39688265 atcaacattaacaaacatagctctaactaattacatcattaacaatccaaaaaa 39688318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 8e-49; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 200 - 346
Target Start/End: Original strand, 11807660 - 11807806
Alignment:
Q  200 actacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaatacctaga 299  Q
    |||| |||||||| |||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||| | ||||||||||||||| | |||||    
T  11807660 actataatcaacattaactaaccaatttctaactaattttatcattaacaatctaaaaaacaaacaaattttcaatgagacattttatcaaacatctaga 11807759  T
Q  300 gtccaactttcaatctacttaaaatcaaacaatttctaaaccctaaa 346  Q
    ||||||||||||||| ||||||| |||||||||||| ||||||||||    
T  11807760 gtccaactttcaatcaacttaaattcaaacaatttcaaaaccctaaa 11807806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 230 - 346
Target Start/End: Original strand, 15424206 - 15424321
Alignment:
Q  230 aactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaatacctagagtccaactttcaatctacttaaaatcaaac 329  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||| ||||| ||| |||||||||||| || ||||||| |||    
T  15424206 aactaatttcatc-ttaacaatccataaaacaaacaaattttcattgagacattttatcaaacacctaaagtgcaactttcaatcaacataaaatctaac 15424304  T
Q  330 aatttctaaaccctaaa 346  Q
    ||||| |||||||||||    
T  15424305 aatttataaaccctaaa 15424321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 194 - 335
Target Start/End: Original strand, 31118988 - 31119131
Alignment:
Q  194 aaactaactacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaa--caaattttcatttagacattttatcaaa 291  Q
    |||||||||| |||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||   |||   ||||| |||||||||||||||    
T  31118988 aaactaactataatcaacattaacaaacatatttctaactaatttcatcattaacaatccaaaaaacaaaacaaaaaaatcattgagacattttatcaaa 31119087  T
Q  292 tacctagagtccaactttcaatctacttaaaatcaaacaatttc 335  Q
     || || | | |||||||||||| ||||||||||||||||||||    
T  31119088 cacatacaatgcaactttcaatcaacttaaaatcaaacaatttc 31119131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 207 - 306
Target Start/End: Original strand, 37939671 - 37939770
Alignment:
Q  207 tcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaatacctagagtccaac 306  Q
    |||||| ||||||| ||||||||||| |||||||||||||||||||  |||| ||||||||||| |||| ||||||||||||||| ||||||||| ||||    
T  37939671 tcaacattaacaaatcaatttctaacaaatttcatcattaacaatcttaaaatcaaacaaatttccattgagacattttatcaaacacctagagttcaac 37939770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 200 - 346
Target Start/End: Original strand, 18206582 - 18206732
Alignment:
Q  200 actacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaa---acaaattttcatttagacattttatcaaatacct 296  Q
    |||| |||||||| ||||||| ||  |||||| ||||||||||||||||||||||||||| ||   | ||||||||||| |||||||||| |||| || |    
T  18206582 actataatcaacattaacaaaacatattctaagtaatttcatcattaacaatccaaaaaataaaacaaaaattttcattgagacattttaccaaacacat 18206681  T
Q  297 agagtccaactttcaatctactta-aaatcaaacaatttctaaaccctaaa 346  Q
    ||||| ||| |||||| | ||| | ||||| ||||||||||||||||||||    
T  18206682 agagtgcaattttcaaacaactaagaaatctaacaatttctaaaccctaaa 18206732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 27756999 - 27757078
Alignment:
Q  205 aatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattt 284  Q
    |||||||| ||||||  |||||||||||||||||||| |||||||   |||||| |||||||||||||||| ||||||||    
T  27756999 aatcaacattaacaattcaatttctaactaatttcataattaacatcgcaaaaatcaaacaaattttcattgagacattt 27757078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 346
Target Start/End: Complemental strand, 20931270 - 20931120
Alignment:
Q  200 actacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaa---caaattttcatttagacattttatcaaatacct 296  Q
    |||| |||||||| ||||||||||  ||||||||||||| |||||||  |||||||||||||||    |||  |||||| |||||||||| |||| || |    
T  20931270 actataatcaacattaacaaaccatattctaactaattttatcattagtaatccaaaaaacaaaaacaaaaaattcattgagacattttaccaaacacat 20931171  T
Q  297 agagtccaactttcaatctactta-aaatcaaacaatttctaaaccctaaa 346  Q
    ||||| ||| |||||| | ||| | ||||| ||| |||||||| |||||||    
T  20931170 agagtgcaattttcaaacaactaagaaatctaacgatttctaatccctaaa 20931120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 346
Target Start/End: Complemental strand, 27333243 - 27333094
Alignment:
Q  200 actacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaa-aaacaaacaaat--tttcatttagacattttatcaaatacct 296  Q
    |||| |||||||| ||||||||||  ||||||||||||| ||||||| ||||||||| ||||||| ||||    ||||| |||||||||| |||| || |    
T  27333243 actataatcaacattaacaaaccatattctaactaattttatcattagcaatccaaagaaacaaa-aaatcaaatcattgagacattttaccaaacacat 27333145  T
Q  297 agagtccaactttcaatctactta-aaatcaaacaatttctaaaccctaaa 346  Q
    ||||| ||| |||||| | ||| | ||||| |||||||| |||||| ||||    
T  27333144 agagtgcaattttcaaacaactaagaaatctaacaatttttaaaccataaa 27333094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 940119 - 940066
Alignment:
Q  206 atcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaa 259  Q
    ||||||| ||||||||  | |||||||||||| |||||||||||||||||||||    
T  940119 atcaacattaacaaacatagttctaactaattacatcattaacaatccaaaaaa 940066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 249
Target Start/End: Complemental strand, 31627197 - 31627162
Alignment:
Q  214 taacaaaccaatttctaactaatttcatcattaaca 249  Q
    |||||| |||||||||||||||||||||||||||||    
T  31627197 taacaatccaatttctaactaatttcatcattaaca 31627162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 32522490 - 32522431
Alignment:
Q  53 aagcataattggtataattacatt-aaattatagcttttccttagataatttgcaaaaca 111  Q
    |||||||| |||||||| |||| | |||| ||||||||||||||||||| ||||||||||    
T  32522490 aagcataaatggtataaatacactcaaatgatagcttttccttagataacttgcaaaaca 32522431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 259
Target Start/End: Original strand, 5308123 - 5308188
Alignment:
Q  194 aaactaactacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaa 259  Q
    ||||| |||| |||||||| ||| ||  ||||||||||||||||| |||||||||| | |||||||    
T  5308123 aaactcactataatcaacattaagaattcaatttctaactaatttaatcattaacattgcaaaaaa 5308188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 27757173 - 27757209
Alignment:
Q  222 caatttctaactaatttcatcattaacaatccaaaaa 258  Q
    |||||||||||| |||| |||||||||||||||||||    
T  27757173 caatttctaacttatttgatcattaacaatccaaaaa 27757209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 197 - 346
Target Start/End: Original strand, 25770212 - 25770362
Alignment:
Q  197 ctaactacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaa-caaacaaattttcatttagacattttatcaaatacc 295  Q
    ||||||| |||||||||||| ||||||||||||||||||||| ||||||| |||||||||||| | |||||| ||||||| | ||||||||||||| |||    
T  25770212 ctaactataatcaacaataaaaaaccaatttctaactaattttatcattagcaatccaaaaaaactaacaaaatttcattgaaacattttatcaaacacc 25770311  T
Q  296 tagagtccaactttcaatctacttaaaatcaaacaatttctaaaccctaaa 346  Q
    ||||||||||||||||||| || |||||||||| |||||||||||||||||    
T  25770312 tagagtccaactttcaatcaacctaaaatcaaataatttctaaaccctaaa 25770362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 194 - 343
Target Start/End: Original strand, 15826136 - 15826285
Alignment:
Q  194 aaactaactacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaata 293  Q
    |||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||| ||||||| | | |||   ||||| ||||||||||||||| |    
T  15826136 aaactaactataatcaacattaacaaatcaatttctaactaatttcatcattaacaattcaaaaaaaataaaaaaaatcattgagacattttatcaaaca 15826235  T
Q  294 cctagagtccaactttcaatctacttaaaatcaaacaatttctaaaccct 343  Q
    |||||||||||  |||||||| |||||||||||||||||||| |||||||    
T  15826236 cctagagtccatatttcaatcaacttaaaatcaaacaatttcaaaaccct 15826285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 194 - 306
Target Start/End: Complemental strand, 13609011 - 13608899
Alignment:
Q  194 aaactaactacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaata 293  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||     
T  13609011 aaactaactataatcaacattaacaaaccaatttctaactaatttcatcattaacaatgcaaaaaacaaacaaattttcattgagacattttatcgaatt 13608912  T
Q  294 cctagagtccaac 306  Q
    |||||||| ||||    
T  13608911 cctagagttcaac 13608899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 194 - 306
Target Start/End: Original strand, 22518041 - 22518153
Alignment:
Q  194 aaactaactacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaata 293  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||| |||| |    
T  22518041 aaactaactataatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaacacaaacaaaatttcattgagacattttaacaaaca 22518140  T
Q  294 cctagagtccaac 306  Q
    |||||||| ||||    
T  22518141 cctagagttcaac 22518153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 195 - 346
Target Start/End: Complemental strand, 39561588 - 39561437
Alignment:
Q  195 aactaactacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaatac 294  Q
    |||| ||||||||||||| ||| |||||||||||||||||| ||||||| ||||||| ||||| ||||||||||||||||| |||||||||| |||| ||    
T  39561588 aactcactacaatcaacattaataaaccaatttctaactaacttcatcactaacaatgcaaaatacaaacaaattttcattgagacattttaccaaacac 39561489  T
Q  295 ctagagtccaactttcaatctacttaaaatcaaacaatttctaaaccctaaa 346  Q
    ||||||| |||||||||||| |  ||||||  |||||||| |||||||||||    
T  39561488 ctagagtgcaactttcaatcaatataaaatataacaatttgtaaaccctaaa 39561437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 197 - 346
Target Start/End: Original strand, 25775783 - 25775929
Alignment:
Q  197 ctaactacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaatacct 296  Q
    ||||||| |||||||||||| |||||||| |||||||||||| ||||||| ||| | ||||||| || |   ||||||| | ||||||||||||| || |    
T  25775783 ctaactataatcaacaataaaaaaccaatctctaactaattttatcattagcaaccaaaaaaactaaaa---tttcattaaaacattttatcaaacactt 25775879  T
Q  297 agagtccaactttcaatctacttaaaatcaaacaatttctaaaccctaaa 346  Q
    | |||||||||||||||| || ||||||||||||||||||||||||||||    
T  25775880 aaagtccaactttcaatcaacctaaaatcaaacaatttctaaaccctaaa 25775929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 194 - 301
Target Start/End: Complemental strand, 12346093 - 12345986
Alignment:
Q  194 aaactaactacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaata 293  Q
    |||||||| | |||||||| |||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| |    
T  12346093 aaactaacaataatcaacattaacaagcaaatttctaactaatttcatcattaacaatgcaaaaaacaaacaaattttcattgagacattttataaaaca 12345994  T
Q  294 cctagagt 301  Q
     |||||||    
T  12345993 tctagagt 12345986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 194 - 346
Target Start/End: Original strand, 6715744 - 6715899
Alignment:
Q  194 aaactaactacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaaca--aat-tttcatttagacattttatcaa 290  Q
    |||||||||| || | ||||||||||| ||||||||||| ||||||| |||||||||||||||||||||| |  |||  |||||| ||||||||||||||    
T  6715744 aaactaactataacctacaataacaaatcaatttctaacaaatttcaccattaacaatccaaaaaacaaaaaataataattcattgagacattttatcaa 6715843  T
Q  291 atacctagagtccaactttcaatctacttaaaatcaaacaatttctaaaccctaaa 346  Q
    | |||||  || || | ||||||| |||||||||||||||||||| ||| ||||||    
T  6715844 acacctacggtgcagcattcaatcaacttaaaatcaaacaatttcaaaaacctaaa 6715899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 207 - 291
Target Start/End: Complemental strand, 24576405 - 24576321
Alignment:
Q  207 tcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaa 291  Q
    |||||| |||||||||||||| |||||||||||||| |||| ||| ||||||||||| ||||||||||| |||||||||||||||    
T  24576405 tcaacattaacaaaccaatttttaactaatttcatcgttaataattcaaaaaacaaataaattttcattgagacattttatcaaa 24576321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 200 - 299
Target Start/End: Complemental strand, 5241665 - 5241566
Alignment:
Q  200 actacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaatacctaga 299  Q
    |||| |||||||| ||| || ||||||||||||||||||||||||||||||| |||||| |||| |||||||||||  || ||||||||||| |||||||    
T  5241665 actataatcaacattaataatccaatttctaactaatttcatcattaacaatgcaaaaatcaaataaattttcattgggatattttatcaaacacctaga 5241566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 200 - 346
Target Start/End: Original strand, 21065803 - 21065951
Alignment:
Q  200 actacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaac-aaacaaattttcatttagacattttatcaaatacctag 298  Q
    |||| |||||||| |||||||| |  || |||||||||||||||||| ||||||||||||| |||||||  |||||| |||||||||| |||| ||  ||    
T  21065803 actataatcaacattaacaaactatattttaactaatttcatcattagcaatccaaaaaacaaaacaaaaattcattgagacattttaccaaacacacag 21065902  T
Q  299 agtccaactttcaatctactta-aaatcaaacaatttctaaaccctaaa 346  Q
    ||| ||| |||||  | ||| | ||||| ||||||||||||||||||||    
T  21065903 agtgcaattttcatacaactaagaaatctaacaatttctaaaccctaaa 21065951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 299
Target Start/End: Original strand, 2413178 - 2413271
Alignment:
Q  205 aatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaatacctaga 299  Q
    |||||||| |||| | |||||||||||||||||||||||||||| || |||||  | ||||| |||||||| ||||||||| ||||| |||||||    
T  2413178 aatcaacattaacgatccaatttctaactaatttcatcattaac-atgcaaaattcgaacaatttttcattgagacattttttcaaacacctaga 2413271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 339
Target Start/End: Complemental strand, 12625484 - 12625368
Alignment:
Q  226 ttctaactaatttcatcattaacaatccaaaaaacaaaca--aattttcatttagacattttatcaaatacctagagtccaactttcaatctactta-aa 322  Q
    ||||||||||||||||||||| |||||||||||||||| |  ||   ||||| |||||||||| |||| || |||||| ||| |||||| | ||| | ||    
T  12625484 ttctaactaatttcatcattagcaatccaaaaaacaaaaaacaaaaatcattgagacattttaacaaacacatagagtgcaattttcaaacaactaagaa 12625385  T
Q  323 atcaaacaatttctaaa 339  Q
    ||| |||||||||||||    
T  12625384 atctaacaatttctaaa 12625368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 259
Target Start/End: Complemental strand, 13553332 - 13553271
Alignment:
Q  198 taactacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaa 259  Q
    |||||| ||| |||| ||||||||  |||||||||||||| |||||||||||||||||||||    
T  13553332 taactataattaacattaacaaacatatttctaactaattacatcattaacaatccaaaaaa 13553271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 9652377 - 9652413
Alignment:
Q  234 aatttcatcattaacaatccaaaaaacaaacaaattt 270  Q
    |||||||||||||||||| ||||||||||||||||||    
T  9652377 aatttcatcattaacaatgcaaaaaacaaacaaattt 9652413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 337
Target Start/End: Original strand, 23555472 - 23555539
Alignment:
Q  270 ttcatttagacattttatcaaatacctagagtccaactttcaatctacttaaaatcaaacaatttcta 337  Q
    |||||||||||||||||||||| | |||||||  ||| ||||||| |  ||||||| |||||||||||    
T  23555472 ttcatttagacattttatcaaacatctagagtgtaacgttcaatcaatataaaatctaacaatttcta 23555539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 256
Target Start/End: Original strand, 16728528 - 16728590
Alignment:
Q  194 aaactaactacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaa 256  Q
    ||||| |||| |||||||| |||||| ||||||||||| |||||||||||  |||||| ||||    
T  16728528 aaactcactataatcaacattaacaatccaatttctaagtaatttcatcaacaacaatgcaaa 16728590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 256
Target Start/End: Original strand, 17705600 - 17705662
Alignment:
Q  194 aaactaactacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaa 256  Q
    ||||| |||| |||||||| |||||| ||||||||||| |||||||||||  |||||| ||||    
T  17705600 aaactcactataatcaacattaacaatccaatttctaagtaatttcatcaacaacaatgcaaa 17705662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 31011017 - 31011070
Alignment:
Q  194 aaactaactacaatcaacaataacaaaccaatttctaactaatttcatcattaa 247  Q
    ||||| |||| |||||| | ||| || |||||||||||||||||||||||||||    
T  31011017 aaacttactataatcaatattaataatccaatttctaactaatttcatcattaa 31011070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 194 - 346
Target Start/End: Complemental strand, 11799633 - 11799481
Alignment:
Q  194 aaactaactacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaata 293  Q
    |||||||||| ||| || |||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||| ||| | |||||||| ||||      
T  11799633 aaactaactataataaaaaataacaaaccaatttctgattaatttcatcattaacaatccaaaaaacaaacaaaattttattgaaacattttaccaaact 11799534  T
Q  294 cctagagtccaactttcaatctacttaaaatcaaacaatttctaaaccctaaa 346  Q
    ||||||||| ||||||||||| |||||||||| ||||| || |||||||||||    
T  11799533 cctagagtctaactttcaatcaacttaaaatctaacaaattttaaaccctaaa 11799481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 242 - 340
Target Start/End: Original strand, 24211099 - 24211197
Alignment:
Q  242 cattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaatacctagagtccaactttcaatctacttaaaatcaaacaatttctaaac 340  Q
    |||||||||||||||||| ||||||||||| ||| ||| ||||||||||| ||||||||| ||| |||||||| || ||||||| ||||||||||||||    
T  24211099 cattaacaatccaaaaaataaacaaatttttattgagatattttatcaaacacctagagtgcaaatttcaatcaacataaaatctaacaatttctaaac 24211197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 194 - 335
Target Start/End: Original strand, 22552816 - 22552947
Alignment:
Q  194 aaactaactacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaata 293  Q
    |||||||||| |  ||||| ||||||||  ||||||||| ||||||||||||||||||||||||||          |||||| ||||||||||| ||| |    
T  22552816 aaactaactatatacaacattaacaaacatatttctaacaaatttcatcattaacaatccaaaaaa----------ttcattgagacattttattaaaca 22552905  T
Q  294 cctagagtccaactttcaatctacttaaaatcaaacaatttc 335  Q
    |||| ||| |||||||||||| ||||||||||||||||||||    
T  22552906 cctacagtgcaactttcaatcaacttaaaatcaaacaatttc 22552947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 205 - 306
Target Start/End: Original strand, 1817845 - 1817945
Alignment:
Q  205 aatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaatacctagagtcca 304  Q
    |||||||| |||||| |||||||||||||||||||||||||||| || |||||| ||||||| |||||||| ||| ||||||||| | ||||||||| ||    
T  1817845 aatcaacattaacaatccaatttctaactaatttcatcattaac-atgcaaaaatcaaacaatttttcattgagatattttatcatacacctagagttca 1817943  T
Q  305 ac 306  Q
    ||    
T  1817944 ac 1817945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 277 - 342
Target Start/End: Complemental strand, 8431343 - 8431278
Alignment:
Q  277 agacattttatcaaatacctagagtccaactttcaatctacttaaaatcaaacaatttctaaaccc 342  Q
    ||||||||||||||| |||||||||||||||||| ||| |||||||||| ||||||||||||||||    
T  8431343 agacattttatcaaacacctagagtccaactttcgatcaacttaaaatctaacaatttctaaaccc 8431278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 205 - 306
Target Start/End: Original strand, 11478902 - 11479003
Alignment:
Q  205 aatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaatacctagagtcca 304  Q
    |||||| | |||||| ||||||| |||||||||||||||||||||  | ||| | ||||||| |||||||| ||||||||||  ||| ||||||||| ||    
T  11478902 aatcaatattaacaatccaatttataactaatttcatcattaacatgcaaaatatcaaacaatttttcattgagacattttactaaacacctagagttca 11479001  T
Q  305 ac 306  Q
    ||    
T  11479002 ac 11479003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 194 - 259
Target Start/End: Original strand, 27348111 - 27348176
Alignment:
Q  194 aaactaactacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaa 259  Q
    ||||| |||| |||||||| ||||||  |||||||||||||||||||||||||||||| |||||||    
T  27348111 aaactcactataatcaacattaacaattcaatttctaactaatttcatcattaacaattcaaaaaa 27348176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 1817725 - 1817777
Alignment:
Q  254 aaaaaacaaacaaattttcatttagacattttatcaaatacctagagtccaac 306  Q
    ||||| ||||||| |||||||| ||||||||||||||| | ||||||| ||||    
T  1817725 aaaaatcaaacaatttttcattaagacattttatcaaacatctagagttcaac 1817777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 195 - 335
Target Start/End: Original strand, 24965481 - 24965623
Alignment:
Q  195 aactaactacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaac--aaacaaattttcatttagacattttatcaaat 292  Q
    ||||||||| |||||||| ||||||||  ||||||||| |||||||||||||||||||||||||||  |||||||  |||||| |||||||||||||||     
T  24965481 aactaactataatcaacattaacaaacatatttctaacaaatttcatcattaacaatccaaaaaacaaaaacaaaaattcattgagacattttatcaaac 24965580  T
Q  293 acctagagtccaactttcaatctacttaaaatcaaacaatttc 335  Q
    ||||||||| ||  |||||||| ||||||||||||||||||||    
T  24965581 acctagagttcatatttcaatcaacttaaaatcaaacaatttc 24965623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 195 - 335
Target Start/End: Original strand, 20007290 - 20007432
Alignment:
Q  195 aactaactacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaac--aaacaaattttcatttagacattttatcaaat 292  Q
    ||||||||| |||||||| ||||||||  ||||||||| |||||||||||||||||| ||||||||  |||||||  |||||| |||||||||||||||     
T  20007290 aactaactataatcaacattaacaaacatatttctaacaaatttcatcattaacaattcaaaaaacaaaaacaaaaattcattgagacattttatcaaac 20007389  T
Q  293 acctagagtccaactttcaatctacttaaaatcaaacaatttc 335  Q
    ||||||||| ||  |||||||| ||||||||||||||||||||    
T  20007390 acctagagttcatatttcaatcaacttaaaatcaaacaatttc 20007432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 196 - 335
Target Start/End: Complemental strand, 32646368 - 32646230
Alignment:
Q  196 actaactacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaatacc 295  Q
    |||||||||||||||| |||||||| ||||| |||||  ||| ||||||||||||| ||||||||||| |||   || || ||||||||||||||| |||    
T  32646368 actaactacaatcaactataacaaatcaattgctaacagattccatcattaacaatacaaaaaacaaa-aaaaaatctttgagacattttatcaaacacc 32646270  T
Q  296 tagagtccaactttcaatctacttaaaatcaaacaatttc 335  Q
    || ||| |||||||||||  ||||||||||||||||||||    
T  32646269 tacagtgcaactttcaataaacttaaaatcaaacaatttc 32646230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 339
Target Start/End: Original strand, 3377361 - 3377500
Alignment:
Q  200 actacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaatacctaga 299  Q
    |||| |||||||| ||||||||||  |||||||||||||||||||||  ||||||||||||||| |||  |||||| ||| |||||| |||| || ||||    
T  3377361 actataatcaacattaacaaaccatattctaactaatttcatcattagtaatccaaaaaacaaa-aaaagttcattgagatattttaccaaacacataga 3377459  T
Q  300 gtccaactttcaatctactta-aaatcaaacaatttctaaa 339  Q
    ||  || |||||| | ||| | ||||| |||||||||||||    
T  3377460 gtgtaattttcaaacaactaagaaatctaacaatttctaaa 3377500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 200 - 263
Target Start/End: Original strand, 43784831 - 43784894
Alignment:
Q  200 actacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaa 263  Q
    |||| |||||||||||||||||||  ||||||||||||||||||||| ||| ||||||||||||    
T  43784831 actataatcaacaataacaaaccatattctaactaatttcatcattagcaacccaaaaaacaaa 43784894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 49033198 - 49033255
Alignment:
Q  206 atcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaa 263  Q
    ||||||| ||||||||  |  ||||||||||| |||||||||||||||||||||||||    
T  49033198 atcaacattaacaaacatagctctaactaattacatcattaacaatccaaaaaacaaa 49033255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 259
Target Start/End: Original strand, 28540847 - 28540901
Alignment:
Q  205 aatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaa 259  Q
    |||||||| ||||||||||  ||||||||||||| || ||| |||||||||||||    
T  28540847 aatcaacattaacaaaccatattctaactaatttgataattcacaatccaaaaaa 28540901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 259
Target Start/End: Complemental strand, 50907794 - 50907740
Alignment:
Q  205 aatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaa 259  Q
    |||||||| ||||||||||  ||||||||||||| || ||| |||||||||||||    
T  50907794 aatcaacattaacaaaccatattctaactaatttgataattcacaatccaaaaaa 50907740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 12024418 - 12024373
Alignment:
Q  261 aaacaaattttcatttagacattttatcaaatacctagagtccaac 306  Q
    ||||||||||||||  ||||||||||||||| ||||||||| ||||    
T  12024418 aaacaaattttcatcaagacattttatcaaacacctagagttcaac 12024373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 267
Target Start/End: Original strand, 23348891 - 23348928
Alignment:
Q  230 aactaatttcatcattaacaatccaaaaaacaaacaaa 267  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  23348891 aactaatttcatcattaacgatccaaaagacaaacaaa 23348928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 28443511 - 28443458
Alignment:
Q  206 atcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaa 259  Q
    ||||||| ||||||||  |  ||||||||||| |||||||||||||||||||||    
T  28443511 atcaacattaacaaacatagctctaactaattacatcattaacaatccaaaaaa 28443458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 39453470 - 39453402
Alignment:
Q  43 aaggcacatgaagcataattggtataattacattaaattatagcttttccttagataatttgcaaaaca 111  Q
    ||||||||| |||||||| ||| | |||||||  ||||  ||| |||||||||||||| ||||||||||    
T  39453470 aaggcacataaagcataaatggcaaaattacaacaaatggtagtttttccttagataacttgcaaaaca 39453402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 195 - 335
Target Start/End: Original strand, 74802 - 74944
Alignment:
Q  195 aactaactacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaac--aaacaaattttcatttagacattttatcaaat 292  Q
    ||||||||| |||||||| ||||||||  ||||||||| ||||||||||| |||||||||||||||  |||||||  |||||| |||||||||||||||     
T  74802 aactaactataatcaacattaacaaacatatttctaacaaatttcatcatcaacaatccaaaaaacaaaaacaaaaattcattgagacattttatcaaac 74901  T
Q  293 acctagagtccaactttcaatctacttaaaatcaaacaatttc 335  Q
    ||||||||| ||  |||||||| ||||||||||||||||||||    
T  74902 acctagagttcatatttcaatcaacttaaaatcaaacaatttc 74944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 7e-34; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 220 - 346
Target Start/End: Complemental strand, 31021008 - 31020878
Alignment:
Q  220 accaatttctaactaatttcatcattaacaatccaaaaaacaaacaaatt----ttcatttagacattttatcaaatacctagagtccaactttcaatct 315  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||| |    |||||| ||||||||||||||| ||||||||| ||| ||||||||     
T  31021008 accaatttctaactaatttcatcattaaaaatccaaaaaacaaaaaaaataaaattcattgagacattttatcaaacacctagagtgcaaatttcaatca 31020909  T
Q  316 acttaaaatcaaacaatttctaaaccctaaa 346  Q
    || ||||||| ||||||||||||||||||||    
T  31020908 acataaaatctaacaatttctaaaccctaaa 31020878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 194 - 306
Target Start/End: Complemental strand, 17755035 - 17754923
Alignment:
Q  194 aaactaactacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaata 293  Q
    ||||| |||| |||||||| |||||| ||||||||||||||||||||||||||||| | ||| ||||||||||||||||||| ||||||||||||||| |    
T  17755035 aaactcactataatcaacattaacaatccaatttctaactaatttcatcattaacagtgcaagaaacaaacaaattttcattgagacattttatcaaaca 17754936  T
Q  294 cctagagtccaac 306  Q
    | |||||| ||||    
T  17754935 cttagagttcaac 17754923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 2298436 - 2298342
Alignment:
Q  17 tattttcctgcacaaatggatggagcaaggcacatgaagcataattggtataattacattaaattatagcttttccttagataatttgcaaaaca 111  Q
    ||||||||||||||||| | |  || ||||||||| |||||||||||  |||||||||| ||||| ||| |||||||||||||| ||||||||||    
T  2298436 tattttcctgcacaaataggtatagtaaggcacataaagcataattgacataattacatcaaattgtagtttttccttagataacttgcaaaaca 2298342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 270 - 346
Target Start/End: Original strand, 19244289 - 19244365
Alignment:
Q  270 ttcatttagacattttatcaaatacctagagtccaactttcaatctacttaaaatcaaacaatttctaaaccctaaa 346  Q
    |||||| ||||||||||||||| |||||||||  ||  ||||||| || ||||||| ||||||||||||| ||||||    
T  19244289 ttcattgagacattttatcaaacacctagagtgtaaaattcaatcaacataaaatctaacaatttctaaagcctaaa 19244365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 346
Target Start/End: Original strand, 18790768 - 18790887
Alignment:
Q  224 atttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaatacctagagtccaactttcaatctactta-aa 322  Q
    |||||||| ||||||||||||||||||||||||||| | | |   | ||||| |||||||||| |||| || |||||| ||| |||||| | ||| | ||    
T  18790768 atttctaaataatttcatcattaacaatccaaaaaa-atata---tatcattgagacattttaccaaacacatagagtgcaattttcaaacaactaagaa 18790863  T
Q  323 atcaaacaatttctaaaccctaaa 346  Q
    ||| ||||||||||||||| ||||    
T  18790864 atctaacaatttctaaaccataaa 18790887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 346
Target Start/End: Complemental strand, 24122627 - 24122558
Alignment:
Q  277 agacattttatcaaatacctagagtccaactttcaatctacttaaaatcaaacaatttctaaaccctaaa 346  Q
    ||||||||||||||| || |||||| ||| |||||| | ||| | |||| ||||||||||||||||||||    
T  24122627 agacattttatcaaacacatagagtgcaattttcaaacaactaagaatctaacaatttctaaaccctaaa 24122558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 31131396 - 31131332
Alignment:
Q  47 cacatgaagcataattggtataattacattaaattatagcttttccttagataatttgcaaaaca 111  Q
    ||||| |||||||| |||||||| ||||  || | |||| |||||||||||||| ||||||||||    
T  31131396 cacataaagcataaatggtataaatacaacaattgatagattttccttagataacttgcaaaaca 31131332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 194 - 306
Target Start/End: Original strand, 28838294 - 28838406
Alignment:
Q  194 aaactaactacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaata 293  Q
    ||||| |||| |||||||| |||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||| ||||||||||| |    
T  28838294 aaactcactataatcaacattaacaatccaatttctaactaatttcatcattaacaatataaaaaacaaacaaattttcattgagatattttatcaaaca 28838393  T
Q  294 cctagagtccaac 306  Q
    |||||||| ||||    
T  28838394 cctagagttcaac 28838406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 194 - 306
Target Start/End: Original strand, 9238625 - 9238736
Alignment:
Q  194 aaactaactacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaata 293  Q
    |||||||||| |||||||| |||||||||||||| ||| |||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||| |    
T  9238625 aaactaactataatcaacattaacaaaccaatttataattaatttcatcattaacaat-gaaaaaacaaacaaattttcattgagacattttatcaaaca 9238723  T
Q  294 cctagagtccaac 306  Q
    | |||||| ||||    
T  9238724 cgtagagttcaac 9238736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 194 - 346
Target Start/End: Complemental strand, 16995872 - 16995721
Alignment:
Q  194 aaactaactacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaata 293  Q
    |||||||||| ||||||| |||||||| ||||||||||| |||| ||||||||||||||||||||| ||| |||   ||||| ||||||||||||||| |    
T  16995872 aaactaactataatcaactataacaaatcaatttctaacaaattccatcattaacaatccaaaaaagaaa-aaaaaatcattgagacattttatcaaaca 16995774  T
Q  294 cctagagtccaactttcaatctacttaaaatcaaacaatttctaaaccctaaa 346  Q
    |||| | | |||||||||||| | ||||||| |||||||||| ||| ||||||    
T  16995773 cctacaatgcaactttcaatcaatttaaaattaaacaatttcaaaaacctaaa 16995721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 200 - 306
Target Start/End: Complemental strand, 26489270 - 26489164
Alignment:
Q  200 actacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaatacctaga 299  Q
    |||| |||||||| ||||||| |||||| ||||||||||||||||||||||| |||||| |||| |||| ||| || ||||||||||||||| |||||||    
T  26489270 actataatcaacattaacaaatcaatttttaactaatttcatcattaacaatgcaaaaagcaaataaatgttctttgagacattttatcaaacacctaga 26489171  T
Q  300 gtccaac 306  Q
    || ||||    
T  26489170 gttcaac 26489164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 194 - 346
Target Start/End: Complemental strand, 22721655 - 22721503
Alignment:
Q  194 aaactaactacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaata 293  Q
    |||||||||| |||||| | ||||||||  ||||||||||||| |||||||||||| |  |||||  |||  ||  |||||| |||||||||| | || |    
T  22721655 aaactaactataatcaaaattaacaaacatatttctaactaatgtcatcattaacattgaaaaaatgaaaagaaaattcattgagacattttaactaaca 22721556  T
Q  294 cctagagtccaactttcaatctacttaaaatcaaacaatttctaaaccctaaa 346  Q
    |||| ||||||  |||||||  |||||||||||||||||||| ||||||||||    
T  22721555 cctaaagtccatatttcaatgaacttaaaatcaaacaatttcaaaaccctaaa 22721503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 259
Target Start/End: Complemental strand, 14095144 - 14095085
Alignment:
Q  200 actacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaa 259  Q
    |||| |||||||||||||||||||  |||||||||||||||||| || ||||||||||||    
T  14095144 actataatcaacaataacaaaccatattctaactaatttcatcactagcaatccaaaaaa 14095085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 249
Target Start/End: Complemental strand, 16003336 - 16003281
Alignment:
Q  194 aaactaactacaatcaacaataacaaaccaatttctaactaatttcatcattaaca 249  Q
    ||||| |||| |||||||| |||||| ||||||||||| |||||||||||||||||    
T  16003336 aaacttactataatcaacattaacaatccaatttctaaataatttcatcattaaca 16003281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 301
Target Start/End: Complemental strand, 38187656 - 38187562
Alignment:
Q  206 atcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaatacctagagt 301  Q
    ||||||| |||||| |||||||||||||||||||||||||||   | | |||||||||||||   ||||| | | ||||||||||| |||||||||    
T  38187656 atcaacattaacaatccaatttctaactaatttcatcattaatggtgc-aaaaacaaacaaaaaatcattgaaatattttatcaaacacctagagt 38187562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 194 - 346
Target Start/End: Original strand, 34246 - 34398
Alignment:
Q  194 aaactaactacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaacaaacaaattttcatttagacattttatcaaata 293  Q
    |||||||||| |||||||| ||||||||  ||||||||| |||||||||||||||| |    ||| ||||  ||  |||||| |||||||||| |||| |    
T  34246 aaactaactataatcaacattaacaaacatatttctaaccaatttcatcattaacattgattaaatcaaaagaaaattcattgagacattttaacaaaca 34345  T
Q  294 cctagagtccaactttcaatctacttaaaatcaaacaatttctaaaccctaaa 346  Q
    |||||||||||  |||||||| |||| ||||||||||||||| ||||||||||    
T  34346 cctagagtccatatttcaatcaacttcaaatcaaacaatttcaaaaccctaaa 34398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 259
Target Start/End: Complemental strand, 5486 - 5427
Alignment:
Q  200 actacaatcaacaataacaaaccaatttctaactaatttcatcattaacaatccaaaaaa 259  Q
    |||| |||||||||||||||||||  |||||||||||||||||| || ||||||||||||    
T  5486 actataatcaacaataacaaaccatattctaactaatttcatcactagcaatccaaaaaa 5427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1212 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold1212
Description:

Target: scaffold1212; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 291
Target Start/End: Original strand, 1282 - 1369
Alignment:
Q  205 aatcaacaataacaaaccaatttctaactaatttcatcattaacaatcc-aaaaaacaaacaaattttcatttagacattttatcaaa 291  Q
    |||||||| ||||||||||  ||||||||||||| || ||| ||||||| ||||||||||  ||||  |||| |||||||||| ||||    
T  1282 aatcaacattaacaaaccatattctaactaatttgataattcacaatccaaaaaaacaaaataattaccattgagacattttaccaaa 1369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0458 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0458
Description:

Target: scaffold0458; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 10204 - 10272
Alignment:
Q  43 aaggcacatgaagcataattggtataattacattaaattatagcttttccttagataatttgcaaaaca 111  Q
    ||||||||| |||||||| ||| | |||||||  ||||  ||| |||||||||||||| ||||||||||    
T  10204 aaggcacataaagcataaatggcaaaattacaacaaatggtagtttttccttagataacttgcaaaaca 10272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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