View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11421_low_2 (Length: 721)

Name: NF11421_low_2
Description: NF11421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11421_low_2
NF11421_low_2
[»] chr2 (4 HSPs)
chr2 (19-396)||(16150379-16150756)
chr2 (75-129)||(22141602-22141656)
chr2 (75-132)||(3669718-3669775)
chr2 (200-266)||(3669834-3669901)
[»] chr1 (2 HSPs)
chr1 (19-396)||(23301555-23301932)
chr1 (86-270)||(26926066-26926252)
[»] chr6 (3 HSPs)
chr6 (77-396)||(8925359-8925677)
chr6 (77-396)||(8935616-8935934)
chr6 (19-286)||(4652971-4653238)
[»] chr5 (1 HSPs)
chr5 (394-714)||(6769738-6770068)
[»] chr8 (3 HSPs)
chr8 (200-270)||(1000607-1000677)
chr8 (481-534)||(3067323-3067378)
chr8 (198-245)||(1000533-1000580)


Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 396
Target Start/End: Original strand, 16150379 - 16150756
Alignment:
Q  19 ttattaacaaacctaccttttctaattgagaacccactccttttggaataattctcataaaatttgaaagcttcttcctcacttagaaaacactgcccta 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16150379 ttattaacaaacctaccttttctaattgagaacccactccttttggcataattctcataaaatttgaaagcttcttcctcacttagaaaacactgcccta 16150478  T
Q  119 taaaaggttcaaaatggttttcaatagtaattgcttcttgttcattgctactcaactcaactactccactttctgaaaaaccacatggttcattgtttgg 218  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  16150479 taaaaggttcaaaatcgttttcaatagtaattgcttcttgttcattgctactcaactcaactactccactttctgaattaccacatggttcattgtttgg 16150578  T
Q  219 aagattgttcaaatcaatcaaatttgtgattctcaacctacataaataaattgaaagcaggaaggtttaaaatgtggagtaaagttgcaaagcaattgaa 318  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  16150579 aagattgttcaaatcaaccaaatttgtgattctcaacctacataaataaattgaaagcaggaaggtttaaaatgtggagtagagttgcaaagcaattgaa 16150678  T
Q  319 agaacaactaataacaaatgtatcaacatgaaagaacaactgataacaaatgtaataacatgaaaaagcaagtaagaa 396  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  16150679 agaacaactaataacaaatgtattaatatgaaagaacaactgataacaaatgtaataacatgaaaaaacaagtaagaa 16150756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 22141602 - 22141656
Alignment:
Q  75 ataaaatttgaaagcttcttcctcacttagaaaacactgccctataaaaggttca 129  Q
    |||||||||| ||||||||| |||| ||||||||||||| || ||||||||||||    
T  22141602 ataaaatttggaagcttctttctcatttagaaaacactgaccaataaaaggttca 22141656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 3669718 - 3669775
Alignment:
Q  75 ataaaatttgaaagcttcttcctcacttagaaaacactgccctataaaaggttcaaaa 132  Q
    ||||||| || ||||||||| |||| ||||||||||||| || |||||||||||||||    
T  3669718 ataaaatctggaagcttctttctcatttagaaaacactgaccaataaaaggttcaaaa 3669775  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 266
Target Start/End: Original strand, 3669834 - 3669901
Alignment:
Q  200 cacatggttcattgtttggaagatt-gttcaaatcaatcaaatttgtgattctcaacctacataaata 266  Q
    ||||||||||||| ||| ||||||| |||||||||||  |||||||||| ||||||| |||| |||||    
T  3669834 cacatggttcattatttagaagatttgttcaaatcaaataaatttgtgactctcaacttacacaaata 3669901  T

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Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 396
Target Start/End: Complemental strand, 23301932 - 23301555
Alignment:
Q  19 ttattaacaaacctaccttttctaattgagaacccactccttttggaataattctcataaaatttgaaagcttcttcctcacttagaaaacactgcccta 118  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23301932 ttattaacaaacctaccttttttaattgagaacccactccttttggcataattctcataaaatttgaaagcttcttcctcacttagaaaacattgcccta 23301833  T
Q  119 taaaaggttcaaaatggttttcaatagtaattgcttcttgttcattgctactcaactcaactactccactttctgaaaaaccacatggttcattgtttgg 218  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  23301832 taaaaggttcaaaatcgttttcaatagtaattgcttcttgttcattgctactcaactcaactactccactttctgaattaccacatggttcattgtttgg 23301733  T
Q  219 aagattgttcaaatcaatcaaatttgtgattctcaacctacataaataaattgaaagcaggaaggtttaaaatgtggagtaaagttgcaaagcaattgaa 318  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23301732 aagattgttcaaatcaaccaaatttgtgattctcaacctacataaataaattgaaagcaggaaggtttaaaatgtggagtaaagttgcaaagcaattgaa 23301633  T
Q  319 agaacaactaataacaaatgtatcaacatgaaagaacaactgataacaaatgtaataacatgaaaaagcaagtaagaa 396  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  23301632 agaacaactaataacaaatgtattaacatgaaagaacaactaataacaaatgtaataacatgaaaaaacaagtaagaa 23301555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 86 - 270
Target Start/End: Complemental strand, 26926252 - 26926066
Alignment:
Q  86 aagcttcttcctcacttagaaaacactgccctataaaaggttcaaaatggttttcaata--gtaattgcttcttgttcattgctactcaactcaactact 183  Q
    |||||||||||||||||| |||||| ||||| |||||||||||||||   ||||| |||  ||||||| ||| || || | | | ||||| |||| ||||    
T  26926252 aagcttcttcctcacttaaaaaacattgcccaataaaaggttcaaaacaattttcgatatagtaattgtttcctgctcgtcgttgctcaaatcaattact 26926153  T
Q  184 ccactttctgaaaaaccacatggttcattgtttggaagattgttcaaatcaatcaaatttgtgattctcaacctacataaataaatt 270  Q
     || ||||||||  | ||||||||| ||| ||||||| ||||||||||||||| |||| ||||| ||  |||||||| |||||||||    
T  26926152 tcattttctgaattatcacatggtttattatttggaacattgttcaaatcaattaaatctgtgactcctaacctacacaaataaatt 26926066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 77 - 396
Target Start/End: Original strand, 8925359 - 8925677
Alignment:
Q  77 aaaatttgaaagcttcttcctcacttagaaaacactgccctataaaaggttcaaaatggttttcaatagtaattgcttcttgttcattgctactcaactc 176  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8925359 aaaatttgaaagcttcttcctcacttagaaaacaccgccctataaaaggttcaaaatcgttttcaatagtaattgcttcttgttcattgctactcaactc 8925458  T
Q  177 aactactccactttctgaaaaaccacatggttcattgtttggaagattgttcaaatcaatcaaatttgtgattctcaacctacataaataaattgaaagc 276  Q
    ||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8925459 aactacttcactttctgaattaccacatggttcattgtttggaagattgttcaaatcaaccaaatttgtgattctcaacctacataaataaattgaaagc 8925558  T
Q  277 aggaaggtttaaaatgtggagtaaagttgcaaagcaattgaaagaacaactaataacaaatgtatcaacatgaaagaacaactgataacaaatgtaataa 376  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||    
T  8925559 aggaaggtttaaaatatggagtaaagttgcaaagcaattgaaagaacaactaataacaaatgtattaacatgaaagaacaactgataacaaatgtattaa 8925658  T
Q  377 catgaaaaagcaagtaagaa 396  Q
    ||||||||| ||||||||||    
T  8925659 catgaaaaa-caagtaagaa 8925677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 77 - 396
Target Start/End: Original strand, 8935616 - 8935934
Alignment:
Q  77 aaaatttgaaagcttcttcctcacttagaaaacactgccctataaaaggttcaaaatggttttcaatagtaattgcttcttgttcattgctactcaactc 176  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8935616 aaaatttgaaagcttcttcctcacttagaaaacaccgccctataaaaggttcaaaatcgttttcaatagtaattgcttcttgttcattgctactcaactc 8935715  T
Q  177 aactactccactttctgaaaaaccacatggttcattgtttggaagattgttcaaatcaatcaaatttgtgattctcaacctacataaataaattgaaagc 276  Q
    ||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8935716 aactacttcactttctgaattaccacatggttcattgtttggaagattgttcaaatcaaccaaatttgtgattctcaacctacataaataaattgaaagc 8935815  T
Q  277 aggaaggtttaaaatgtggagtaaagttgcaaagcaattgaaagaacaactaataacaaatgtatcaacatgaaagaacaactgataacaaatgtaataa 376  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||    
T  8935816 aggaaggtttaaaatatggagtaaagttgcaaagcaattgaaagaacaactaataacaaatgtattaacatgaaagaacaactgataacaaatgtattaa 8935915  T
Q  377 catgaaaaagcaagtaagaa 396  Q
    ||||||||| ||||||||||    
T  8935916 catgaaaaa-caagtaagaa 8935934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 4652971 - 4653238
Alignment:
Q  19 ttattaacaaacctaccttttctaattgagaacccactccttttggaataattctcataaaatttgaaagcttcttcctcacttagaaaacactgcccta 118  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| | || || |    
T  4652971 ttattaacaaacctaccttttctaattgagaacccactcattttggcataattctcataaaatttgaaagcttcttcctcacttagaaaatattgtccaa 4653070  T
Q  119 taaaaggttcaaaatggttttcaatagtaattgcttcttgttcattgctactcaactcaactactccactttctgaaaaaccacatggttcattgtttgg 218  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  4653071 taaaaggttcgaaatagttttcaatagtaattgcttcttgttcattgctactcaactcaactactccactttctgaattaccacatggttcattgtttgg 4653170  T
Q  219 aagattgttcaaatcaatcaaatttgtgattctcaacctacataaataaattgaaagcaggaaggttt 286  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4653171 aagattgttcaaatcaaccaaatttatgattctcaacctacataaataaattgaaagcaggaaggttt 4653238  T

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Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 394 - 714
Target Start/End: Original strand, 6769738 - 6770068
Alignment:
Q  394 gaaaaaattagggccccctacggccggccctgtttactggcatgttttttaagtaatgccgatatatctttcttgttcttactcatctttcatatgttat 493  Q
    ||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6769738 gaaaaaattagggcccc-tacagccggccctgtttactggcatgctttttaagtaatgccgatatatctttcttgttcttacttatctttcatatgttat 6769836  T
Q  494 caacaacttcactctatataattaatagttatttattctctnnnnnnnntcacaaactaaacattcaagatatccgcgcaactgcaggattatatctagt 593  Q
    |||||||||||||||||||||||||||||||||||||||||        |||| |||||| ||||||||||||||||||||| |||||||||||||||||    
T  6769837 caacaacttcactctatataattaatagttatttattctctaaaaaaaatcac-aactaagcattcaagatatccgcgcaaccgcaggattatatctagt 6769935  T
Q  594 ttttctattcattgcacac------------cttttctnnnnnnnntatcttttctatttaatatttctttgtaacaaaagtcaaacaatggaatagtta 681  Q
    |||||||||||||||||||            |||||||        ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6769936 ttttctattcattgcacaccttttcgtttggcttttctaaaaaaaatatattttctatttaatatttctttgtaacaaaagtcaaacaatggaatagtta 6770035  T
Q  682 gtttatttagttctatgctattatttcatctca 714  Q
    |||||||||||||||||||||||||||||||||    
T  6770036 gtttatttagttctatgctattatttcatctca 6770068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 8e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 200 - 270
Target Start/End: Original strand, 1000607 - 1000677
Alignment:
Q  200 cacatggttcattgtttggaagattgttcaaatcaatcaaatttgtgattctcaacctacataaataaatt 270  Q
    ||||||||| ||| ||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||    
T  1000607 cacatggtttattatttggaagattgttcaaatcaattaaatttgtgactctcaacctacacaaataaatt 1000677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 481 - 534
Target Start/End: Complemental strand, 3067378 - 3067323
Alignment:
Q  481 tttcatatgttatcaacaacttcactctata--taattaatagttatttattctct 534  Q
    ||||| |||||||||||||||| ||| ||||  |||||||||||||||||||||||    
T  3067378 tttcacatgttatcaacaacttgactatataaataattaatagttatttattctct 3067323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 245
Target Start/End: Original strand, 1000533 - 1000580
Alignment:
Q  198 accacatggttcattgtttggaagattgttcaaatcaatcaaatttgt 245  Q
    |||||||| || ||| ||||||||||||||||||||||| ||||||||    
T  1000533 accacatgatttattatttggaagattgttcaaatcaattaaatttgt 1000580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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