View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11421_low_20 (Length: 237)
Name: NF11421_low_20
Description: NF11421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11421_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 15 - 220
Target Start/End: Complemental strand, 17504788 - 17504587
Alignment:
| Q |
15 |
agttaagaagtctggtagttagactcacacattttaagtgtggagaattcgaggttcgaatctcaatccatgcatatcattaatgttcatagagcttaca |
114 |
Q |
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| T |
17504788 |
agttaagaagtctaatagttagactcacacattttaagtgtggagaattcgaggttcgaatctcgatccatgcatatcattaatgttcatagagcttacc |
17504689 |
T |
|
| Q |
115 |
atgcgagttacatttaaatgacacctcttcatttctttagttttaaagagttttaaagtgtatatttaactagtgtgttgcatgtgcaatgcacgggtag |
214 |
Q |
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| T |
17504688 |
atccgagttacatttaaatgccacctc----tttcttaagttttaaagagttttaaagtgtatatttaactagtgtgttgcctgtgcgatgcacgggtag |
17504593 |
T |
|
| Q |
215 |
aattaa |
220 |
Q |
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|||||| |
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| T |
17504592 |
aattaa |
17504587 |
T |
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