View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11421_low_4 (Length: 573)
Name: NF11421_low_4
Description: NF11421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11421_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 472; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 18 - 561
Target Start/End: Original strand, 24405848 - 24406391
Alignment:
| Q |
18 |
cagatatcacaaattcacaatttcacaacaaatatgggacataactagtcaagaaataacaaatttccattttcacaatgtcaattttataagaatgatt |
117 |
Q |
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| T |
24405848 |
cagatatcacaaattcacaatttcacaacacatatggtgcataactatgcaggaaacaacaaatttccattttcacaatgtcaattttataagaatgatt |
24405947 |
T |
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| Q |
118 |
tggaacaataatgaaaaacaattaaaattggaccaaacacatcaagcatatatatgcttcaaaatatcaaattataaaatagcaaattataacaatatca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24405948 |
tggaacaataatgaaaaacaattaaaattggaccaaacacatcaagcatatatatgcttcaaaatatcaaattataaaatagcaaattataacaatatca |
24406047 |
T |
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| Q |
218 |
tgacacaagaaccattcaccaaaaaccttccaaatataaagaaaagcagatatgttgatcatagtttgataaataaaacgaagcataaaataaatccaca |
317 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24406048 |
tgacacaagaaccattaaccaaaaaccttccaaatataaagaaaagcagatatgttgatcatagtttgataaataaaacgaagcataaaataaatccaca |
24406147 |
T |
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| Q |
318 |
tgacaaatcctagactaagattgtaaaatgttaaaatataatggcaaataaatccttgactaatttcatgatttgttgcataatcattcaaaagcccaac |
417 |
Q |
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||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24406148 |
tgacaaatccttgactgagaacataaaatgttaaaatataatggcaaataaatccttgactaatttcatgatttgttgcataatcattcaaaagcccaac |
24406247 |
T |
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| Q |
418 |
cgacttccttaagaagttccgcgtattcctcaggactgaagtcattctcaacgttgaaaattttgcgaatctcctccaccgtcttatccttgatagtttc |
517 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24406248 |
cgacttccttaagaagttccgcatattcctccggactgaagtcattctcaacattgaaaattttgcgaatctcctccaccgtcttatccttgatagtttc |
24406347 |
T |
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| Q |
518 |
tgctacatcctgacatgtaagttccagtaggctcttgatgtcca |
561 |
Q |
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| T |
24406348 |
tgctacatcctggcatgtaagttccagtaggctcttgatatcca |
24406391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 471 - 561
Target Start/End: Complemental strand, 24412908 - 24412818
Alignment:
| Q |
471 |
ttgaaaattttgcgaatctcctccaccgtcttatccttgatagtttctgctacatcctgacatgtaagttccagtaggctcttgatgtcca |
561 |
Q |
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|||||||| | ||||| |||||||||||||||||||||||||| |||| |||||| ||| ||||||||||| |||||||||||| |||| |
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| T |
24412908 |
ttgaaaatctggcgaacctcctccaccgtcttatccttgatagattctactacattctggcatgtaagttcatataggctcttgatatcca |
24412818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 289 - 359
Target Start/End: Complemental strand, 5647222 - 5647152
Alignment:
| Q |
289 |
aataaaacgaagcataaaataaatccacatgacaaatcctagactaagattgtaaaatgttaaaatataat |
359 |
Q |
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||||||||||||||||| ||||||||||||| | |||||| ||| ||||||| |||||||| |||||| |
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| T |
5647222 |
aataaaacgaagcataacataaatccacatgtctaatccttaactgtgattgtaccatgttaaattataat |
5647152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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