View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11421_low_7 (Length: 482)

Name: NF11421_low_7
Description: NF11421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11421_low_7
NF11421_low_7
[»] chr4 (1 HSPs)
chr4 (18-482)||(29625705-29626168)


Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 18 - 482
Target Start/End: Complemental strand, 29626168 - 29625705
Alignment:
Q  18 tactccctatacttgtttcctattatacaatgatactcctccatcaatggaattagaaattttcataatcaaacttaggccaattatataagcaagcaat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29626168 tactccctatacttgtttcctattatacaatgatactcctccatcaaaggaattagaaattttcataatcaaacttaggccaattatataagcaagcaat 29626069  T
Q  118 atgcaaaatccaaatcagctcatcaatttttccaacacttccccatgttaatttttaaatagtccatagcagcacatcacaattcgcagcaaccttgaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29626068 atgcaaaatccaaatcagctcatcaatttttccaacacttccccatgttaatttttaaatagtccatagcagcacatcacaattcgcagcaaccttgaaa 29625969  T
Q  218 cacatcagatcaaaaataatgtgtccagtactccaggcttgcttagacaaatcaaaacacaaatcgatcttgctatcatccatgggataataaattagaa 317  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  29625968 cacatcagatcaaaaataatttgtccagtactccaggcttgcttagac-aatcaaaacacaaatcgatcttgctatcatccgtgggatgataaattagaa 29625870  T
Q  318 tcagtacctcattaggtcccttcctattgcactgttgtcaccacaaaatacctctccgtaaaacacattgatacagctgacaccctcctaatccaatcct 417  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  29625869 tcagtacctcattaggtcccttcctattgcactcttgtcaccacaaaatacctctccgtgaaacacattgatacagctgacaccctccgaatccaatcct 29625770  T
Q  418 tgcatatcagattgctacaaactgtttcaattttctaccttccatatttgatccttgctatgtat 482  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29625769 tgcatatcagattgctacaaactgtttcaattttctaccttccatatttgatccttgctatgtat 29625705  T

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