View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11421_low_8 (Length: 401)
Name: NF11421_low_8
Description: NF11421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11421_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 13 - 384
Target Start/End: Complemental strand, 194364 - 193998
Alignment:
| Q |
13 |
aaggagggaaaatcatgatcatctattagaagaactaaatttgagtggacgaggattaaaagtaataatggaatgtttgagatttggaaaatgaaggttt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
194364 |
aaggagggaaaatcatgatcatctattagaagaactaaatttgagtggacgaggattaaaagtaataatggaatgtttgagatttggaaaatgaaggttt |
194265 |
T |
|
| Q |
113 |
gtctacgtgaaagataaaatgctaaagaagagtggctcgggtagtcaattagtgagaagacaactgattgtgagagacttggaagttggaatatgtagcc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
194264 |
gtctacgtgaaagataaaatgctaaagaagagtggctcgtgtagtcaattagtgagaagacaactgattgtgagagacttggaagttggaatatgtagcc |
194165 |
T |
|
| Q |
213 |
aacgtgtgcttgtttttaggaactaaataatcgtttcattgatcccacaattattcacggcaatggagtggcatgtagagggaaagaaatatgcttttgg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
194164 |
aacgtgtgcttgtttttaggaactaaataatcgtttcattgatcccacaattattcacggcaatggagtggcatgtagagggaaagaaatatacttttgg |
194065 |
T |
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| Q |
313 |
agtggtatagtgcactgcatagtgaataccaataatttggcaactaaaatatctaattaatattattatacc |
384 |
Q |
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| T |
194064 |
agtggtatag-----tgcatagtgaataccaataatttggcaactaaaatatctaattaatattattatacc |
193998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 27 - 135
Target Start/End: Complemental strand, 25004771 - 25004664
Alignment:
| Q |
27 |
atgatcatctattagaagaactaaatttgagtggacgaggattaaaagtaataatggaatgtttgagatttggaaaatgaaggtttgtctacgtgaaaga |
126 |
Q |
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| T |
25004771 |
atgatcatctattagaagaactaaatttgagtgcacaaggatt-aaagtaatgatggaatgtttaagatttggaaaataaaggctcgtttacgtgaaagg |
25004673 |
T |
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| Q |
127 |
taaaatgct |
135 |
Q |
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||||||||| |
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| T |
25004672 |
taaaatgct |
25004664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 13 - 137
Target Start/End: Complemental strand, 31210747 - 31210623
Alignment:
| Q |
13 |
aaggagggaaaatcatgatcatctattagaagaactaaatttgagtggacgaggattaaaagtaataatggaatgtttgagatttggaaaatgaaggttt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31210747 |
aaggagggaaaatcatgatcatctattagaagaactaaatttgagtgggcggggagtaaaagtaataatggaatgtttgagatttggaaaatgaaggttt |
31210648 |
T |
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| Q |
113 |
gtctacgtgaaagataaaatgctaa |
137 |
Q |
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| T |
31210647 |
gcctacgtgaaggataaaaggctaa |
31210623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 48655066 - 48655110
Alignment:
| Q |
162 |
tagtgagaagacaactgattgtgagagacttggaagttggaatat |
206 |
Q |
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||||| |||| ||||||||||||||||||||||| ||||| |||| |
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| T |
48655066 |
tagtgggaagccaactgattgtgagagacttggacgttggcatat |
48655110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 27 - 135
Target Start/End: Original strand, 5005379 - 5005486
Alignment:
| Q |
27 |
atgatcatctattagaagaactaaatttgagtggacgaggattaaaagtaataatggaatgtttgagatttggaaaatgaaggtttgtctacgtgaaaga |
126 |
Q |
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||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||| ||||||||||||| |||| | || |||||||||| |
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| T |
5005379 |
atgatcatctattagaagaactaaatttgagtgcacaaggattaaa-gtaataatggaatgtttaagatttggaaaataaaggctcgtttacgtgaaagg |
5005477 |
T |
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| Q |
127 |
taaaatgct |
135 |
Q |
| |
|
||||||||| |
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|
| T |
5005478 |
taaaatgct |
5005486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 27 - 135
Target Start/End: Complemental strand, 16474905 - 16474798
Alignment:
| Q |
27 |
atgatcatctattagaagaactaaatttgagtggacgaggattaaaagtaataatggaatgtttgagatttggaaaatgaaggtttgtctacgtgaaaga |
126 |
Q |
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||||||||||||||||||||||||||||||||| || |||||| |||||||| ||||||||||| ||||||||||||| |||| | || |||||||||| |
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| T |
16474905 |
atgatcatctattagaagaactaaatttgagtgcacaaggatt-aaagtaatgatggaatgtttaagatttggaaaataaaggctcgtttacgtgaaagg |
16474807 |
T |
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| Q |
127 |
taaaatgct |
135 |
Q |
| |
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||||||||| |
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|
| T |
16474806 |
taaaatgct |
16474798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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