View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11421_low_9 (Length: 399)
Name: NF11421_low_9
Description: NF11421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11421_low_9 |
 | |
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| [»] scaffold0466 (2 HSPs) |
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| [»] scaffold1041 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 19 - 393
Target Start/End: Original strand, 25358932 - 25359308
Alignment:
| Q |
19 |
atttatatcttgttgttgttcatttttgacaacatgattccctttgaactttgatgataaccaacaaagttgaatttcttgctcttgtcgtcaagtttgg |
118 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
25358932 |
atttatatcttgttgatgttcatttttgacaacatgattccctttgaactttgatgataaccaacaaagttgaatttctagctcttgtcgtcaagtttgg |
25359031 |
T |
|
| Q |
119 |
ctttcttatcgtctaaaatatgaacatatgtgacccctcaagtgtgatattctagaatttcttccactctatgcatcttgtggtgtttttcacacaatta |
218 |
Q |
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|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | | |
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| T |
25359032 |
ctttcttatcgtctaaaatatgaacatatgtgaccc-tcaagtgtgatattctagaatttcttccactctatgcatcttgtgatgtttttcacacactaa |
25359130 |
T |
|
| Q |
219 |
tttttggagatctattagttaattagactacacacgccacaacttcaatcaacaattattttggtagttaattcatatcctcggtacgtccatatagctt |
318 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25359131 |
ttgttggagatctattagttaattagactacacacgccacaacttcaaccaacaattattttggtagttaattcatatcctcggtacgtccatatagctt |
25359230 |
T |
|
| Q |
319 |
ttaattatctgcaagctggttctctccata----atagctttgttattcttgaaaaaataatcttatgatctctgcttc |
393 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
25359231 |
ttaattatctgcaagctggttctctccataatatatagctttgttattcttgaaaaaa-aatcttatgatctctgcttc |
25359308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 35 - 393
Target Start/End: Original strand, 25398988 - 25399341
Alignment:
| Q |
35 |
tgttcatttttgacaacatgattccctttgaactttgatgataaccaacaaagttgaatttcttgctcttgtcgtcaagtttggctttcttatcgtctaa |
134 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25398988 |
tgttcatttttgacaacatgattccctttgaactttgatgataaccaacaaagttgaatttct-------gtcgtcaagtttggctttcttatcgtctaa |
25399080 |
T |
|
| Q |
135 |
aatatgaacatatgtgacccctcaagtgtgatattctagaatttcttccactctatgcatcttgtggtgtttttcacacaattatttttggagatctatt |
234 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||||||||||| |
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| T |
25399081 |
aatatgaacatatgtgaccc-tcaagtgtgatattctagaatttcttccactctatgcatcttgtgatgtttttcacacactaattgttggagatctatt |
25399179 |
T |
|
| Q |
235 |
agttaattagactacacacgccacaacttcaatcaacaattattttggtagttaattcatatcctcggtacgtccatatagcttttaattatctgcaagc |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25399180 |
agttaattagactacacacgccacaacttcaaccaataattattttggtagttaattcatatcctcggtacgtccatatagcttttaattatctgcaagc |
25399279 |
T |
|
| Q |
335 |
tggttctctccata----atagctttgttattcttgaaaaaataatcttatgatctctgcttc |
393 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
25399280 |
tggttctctccataatatatagctttgttattcttgaaaaaa-aatcttatgatctctgcttc |
25399341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 20 - 287
Target Start/End: Original strand, 25650704 - 25650968
Alignment:
| Q |
20 |
tttatatcttgttgttgttcatttttgacaacatgattccctttgaactttgatgataaccaacaaagttgaatttcttgctcttgtcgtcaagtttggc |
119 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
25650704 |
tttatatcttgttgttgttcattttttaaaacatgattccctttgaactttgatgataaccaacaaagttgaatttctagct--tgtcgtcaagtttggc |
25650801 |
T |
|
| Q |
120 |
tttcttatcgtctaaaatatgaacatatgtgacccctcaagtgtgatattctagaatttcttccactctatgcatcttgtggtgtttttcacacaattat |
219 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||| |
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|
| T |
25650802 |
tttcttatcgtccaaaatatgaacatatgcgaccc-tcaagtgtgatattctagaatttcttccactctatgcatcttgcggtatttttcacacacttat |
25650900 |
T |
|
| Q |
220 |
ttttggagatctattagttaattagactacacacgccacaacttcaatcaacaattattttggtagtt |
287 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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|
| T |
25650901 |
tgttggagatctattagttaattagactacacacgccacaacttcaacccacaattattttggtagtt |
25650968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 46 - 287
Target Start/End: Original strand, 25618003 - 25618243
Alignment:
| Q |
46 |
gacaacatgattccctttgaactttgatgataaccaacaaagttgaatttcttgctcttgtcgtcaagtttggctttcttatcgtctaaaatatgaacat |
145 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25618003 |
gacaacatgattcccttagaactttgatgataaccaaaaaagttgaatttctagctcttgtcgtcaagtttggctttcttatcgtctaaaatatgaacat |
25618102 |
T |
|
| Q |
146 |
atgtgacccctcaagtgtgatattctagaatttcttccactctatgcatcttgtggtgtttttcacacaattatttttggagatctattagttaattaga |
245 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||| |
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|
| T |
25618103 |
atgtgaccc-tcaagtgtgatattctagaatttcttccactctatgcatcttgtggtgtttttcacatacttattgttggagatctattagttaattaga |
25618201 |
T |
|
| Q |
246 |
ctacacacgccacaacttcaatcaacaattattttggtagtt |
287 |
Q |
| |
|
|||||||||||||||||| || | |||||||||||||||||| |
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| T |
25618202 |
ctacacacgccacaacttaaacccacaattattttggtagtt |
25618243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 25392251 - 25392329
Alignment:
| Q |
19 |
atttatatcttgttgttgttcatttttgacaacatgattccctttgaactttgatgataaccaacaaagttgaatttct |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25392251 |
atttatatcttgttgttgttcatttttgacaacatgattccctttgaactttgatgataaccaacaaagttgaatttct |
25392329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 194 - 287
Target Start/End: Original strand, 25495042 - 25495136
Alignment:
| Q |
194 |
tcttgtggtgtttttcacacaattatttttggagatctattagttaattagactacacacgccacaacttcaa-tcaacaattattttggtagtt |
287 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
25495042 |
tcttgtggtgtttttcacacacttattgttggagatctattagttaattcgactacacacgccacaacttcaaccccacaattattttggtagtt |
25495136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 284 - 372
Target Start/End: Original strand, 25495282 - 25495366
Alignment:
| Q |
284 |
agttaattcatatcctcggtacgtccatatagcttttaattatctgcaagctggttctctccataatagctttgttattcttgaaaaaa |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || || |||||||||||||||||||| |
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|
| T |
25495282 |
agttaattcatatcctcggtacgtccatatagctt----ttatctgcaagctggttctctcgattgtacctttgttattcttgaaaaaa |
25495366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 284 - 375
Target Start/End: Original strand, 25651231 - 25651318
Alignment:
| Q |
284 |
agttaattcatatcctcggtacgtccatatagcttttaattatctgcaagctggttctctccataatagctttgttattcttgaaaaaataa |
375 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||| ||| || ||||||||||||||||||||||| |
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|
| T |
25651231 |
agttaattcacatcttcggtacgtccatatagctttta----tctgcaagctggttctctcgatagtacctttgttattcttgaaaaaataa |
25651318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 31 - 287
Target Start/End: Complemental strand, 6476 - 6221
Alignment:
| Q |
31 |
ttgttgttcatttttgacaacatgattccctttgaactttgatgataaccaacaaagttgaatttcttgctcttgtcgtcaagtttggctttcttatcgt |
130 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
6476 |
ttgttgttcatttttgacaacatgattccctatgaactttgatgataaccaacaaggttgaatttctagctcttgtcgtcaagtttggctttcttatcgt |
6377 |
T |
|
| Q |
131 |
ctaaaatatgaacatatgtgacccctcaagtgtgatattctagaatttcttccactctatgcatcttgtggtgtttttcacacaattatttttggagatc |
230 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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|
| T |
6376 |
ctaaaatatgaacatatgtgaccc-tcaagtgtgataatctagaatttcttccactctatgcatcttgtggtgtttttcacacacttattgttggagatc |
6278 |
T |
|
| Q |
231 |
tattagttaattagactacacacgccacaacttcaatcaacaattattttggtagtt |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
6277 |
tattagttaattagactacacacgccacaacttcaacccacaattattttggtagtt |
6221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 362
Target Start/End: Complemental strand, 6070 - 5996
Alignment:
| Q |
284 |
agttaattcatatcctcggtacgtccatatagcttttaattatctgcaagctggttctctccataatagctttgttatt |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| || || |||||||||| |
|
|
| T |
6070 |
agttaattcatatcctcggtacgtccatatagctt----ttatctgtaagctggttctctcgattttacctttgttatt |
5996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1041 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: scaffold1041
Description:
Target: scaffold1041; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 284 - 393
Target Start/End: Complemental strand, 426 - 320
Alignment:
| Q |
284 |
agttaattcatatcctcggtacgtccatatagcttttaattatctgcaagctggttctctccataatagctttgttattcttgaa-aaaataatcttatg |
382 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| || |||||| |
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|
| T |
426 |
agttaatccatatcctcggtacgtccatatagctttta----tctgcaagctggttctctccataatagctttgttattcttgaaaaaaaaaaacttatg |
331 |
T |
|
| Q |
383 |
atctctgcttc |
393 |
Q |
| |
|
||||||||||| |
|
|
| T |
330 |
atctctgcttc |
320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1041; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 581 - 542
Alignment:
| Q |
19 |
atttatatcttgttgttgttcatttttgacaacatgattc |
58 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
581 |
atttatatcttgttgttgttcatttttgacaacatgattc |
542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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