View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11422_high_12 (Length: 377)

Name: NF11422_high_12
Description: NF11422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11422_high_12
NF11422_high_12
[»] chr7 (6 HSPs)
chr7 (288-357)||(24016118-24016187)
chr7 (70-232)||(15507854-15508016)
chr7 (68-215)||(26235964-26236111)
chr7 (94-233)||(23992697-23992836)
chr7 (143-225)||(24009576-24009658)
chr7 (134-224)||(24001383-24001473)
[»] chr6 (3 HSPs)
chr6 (74-218)||(5978151-5978295)
chr6 (94-159)||(19747552-19747617)
chr6 (82-218)||(33568014-33568150)
[»] chr3 (1 HSPs)
chr3 (82-218)||(36339247-36339383)
[»] chr5 (1 HSPs)
chr5 (145-220)||(23085935-23086010)
[»] chr8 (1 HSPs)
chr8 (85-209)||(11345951-11346075)
[»] chr4 (2 HSPs)
chr4 (115-226)||(23839870-23839981)
chr4 (116-182)||(23847989-23848055)
[»] scaffold0097 (1 HSPs)
scaffold0097 (134-225)||(17119-17210)
[»] chr2 (1 HSPs)
chr2 (134-225)||(20713280-20713371)
[»] chr1 (1 HSPs)
chr1 (82-225)||(17954482-17954625)
[»] scaffold0707 (1 HSPs)
scaffold0707 (82-218)||(4408-4544)


Alignment Details
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 288 - 357
Target Start/End: Original strand, 24016118 - 24016187
Alignment:
Q  288 agaaaattcactcatctttggtcgtaacgacaattcatattatttgaagtatggttctcatattgccggt 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24016118 agaaaattcactcatctttggtcgtaacgacaattcatattatttgaagtatggttctcatattgccggt 24016187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 70 - 232
Target Start/End: Original strand, 15507854 - 15508016
Alignment:
Q  70 ttccttcctgatgaactcattgccgaaatcctgtcctttcttagtgtgaaaaccatcgtgcaactcaagtgtgtgagcaagtcatggaacattctcattt 169  Q
    |||||||| || || ||||| |||||| |||| ||||| ||||   | |||||||||||||||||||| ||  ||||||||||||||||   |||||| |    
T  15507854 ttccttcccgacgagctcatagccgaagtcctatccttccttaacataaaaaccatcgtgcaactcaaatgcttgagcaagtcatggaaagctctcatat 15507953  T
Q  170 ccaatccatccttcatcaagaagcatcttaagaagtcatcacaaaacccacacctcacattat 232  Q
    |  ||||| |||||||| | ||||| ||||||||||| |||||||| ||||| ||||| ||||    
T  15507954 ctgatccaaccttcatcgaaaagcaccttaagaagtcgtcacaaaagccacaactcacgttat 15508016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 68 - 215
Target Start/End: Original strand, 26235964 - 26236111
Alignment:
Q  68 cattccttcctgatgaactcattgccgaaatcctgtcctttcttagtgtgaaaaccatcgtgcaactcaagtgtgtgagcaagtcatggaacattctcat 167  Q
    ||||| |||||| ||| |||||  |||||||||||||||| ||| | || |||||| ||  || | |||| || ||||||||||| ||||||| ||||||    
T  26235964 cattcattcctggtgatctcatcaccgaaatcctgtccttgctttgcgttaaaaccctcacgcgattcaaatgcgtgagcaagtcctggaacactctcat 26236063  T
Q  168 ttccaatccatccttcatcaagaagcatcttaagaagtcatcacaaaa 215  Q
     ||  ||||| ||||| || | || |||||||||||||||||||||||    
T  26236064 ctctgatccaaccttcgtcgacaaccatcttaagaagtcatcacaaaa 26236111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 233
Target Start/End: Original strand, 23992697 - 23992836
Alignment:
Q  94 gaaatcctgtcctttcttagtgtgaaaaccatcgtgcaactcaagtgtgtgagcaagtcatggaacattctcatttccaatccatccttcatcaagaagc 193  Q
    |||||||| || |||||||| || |||| ||| ||||||||||||||  ||||||||||||||  || | |||| ||| ||||| ||||  || | ||||    
T  23992697 gaaatcctatcttttcttagggttaaaaacattgtgcaactcaagtgcctgagcaagtcatggttcactatcatatccgatccaacctttgtcgaaaagc 23992796  T
Q  194 atcttaagaagtcatcacaaaacccacacctcacattatt 233  Q
    | |||||||| |||||  || ||||||| |||||||||||    
T  23992797 accttaagaattcatctaaacacccacatctcacattatt 23992836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 143 - 225
Target Start/End: Original strand, 24009576 - 24009658
Alignment:
Q  143 tgagcaagtcatggaacattctcatttccaatccatccttcatcaagaagcatcttaagaagtcatcacaaaacccacacctc 225  Q
    |||||||||||||||||| | |||| ||| |||||  |||  || | | ||||||||||||||||||||||||||||||||||    
T  24009576 tgagcaagtcatggaacactttcatctccgatccaaactttgtccaaatgcatcttaagaagtcatcacaaaacccacacctc 24009658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 224
Target Start/End: Original strand, 24001383 - 24001473
Alignment:
Q  134 tcaagtgtgtgagcaagtcatggaacattctcatttccaatccatccttcatcaagaagcatcttaagaagtcatcacaaaacccacacct 224  Q
    |||| ||| |||||||||||||||||| | |||| ||| ||||| ||||  || | | ||||||||||||||||||||| ||| |||||||    
T  24001383 tcaaatgtctgagcaagtcatggaacactttcatctccgatccaacctttgtccaaatgcatcttaagaagtcatcacagaactcacacct 24001473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 74 - 218
Target Start/End: Original strand, 5978151 - 5978295
Alignment:
Q  74 ttcctgatgaactcattgccgaaatcctgtcctttcttagtgtgaaaaccatcgtgcaactcaagtgtgtgagcaagtcatggaacattctcatttccaa 173  Q
    ||||||| |||||||| | ||||||||| || || ||||| |||||||||||||  | | ||||||| |||| |||||||||||||| |||||| |||||    
T  5978151 ttcctgacgaactcatcgtcgaaatcctatcgttccttagcgtgaaaaccatcgcacgattcaagtgcgtgaacaagtcatggaacactctcatctccaa 5978250  T
Q  174 tccatccttcatcaagaagcatcttaagaagtcatcacaaaaccc 218  Q
    |||| | |||| | | | ||| |||||||||||||||||||||||    
T  5978251 tccaactttcaccgaaatgcaccttaagaagtcatcacaaaaccc 5978295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 159
Target Start/End: Complemental strand, 19747617 - 19747552
Alignment:
Q  94 gaaatcctgtcctttcttagtgtgaaaaccatcgtgcaactcaagtgtgtgagcaagtcatggaac 159  Q
    |||||||| ||||||||||  |||||||||||| ||||| | || |||||||||||||||||||||    
T  19747617 gaaatcctatcctttcttaacgtgaaaaccatcatgcaattaaaatgtgtgagcaagtcatggaac 19747552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 218
Target Start/End: Original strand, 33568014 - 33568150
Alignment:
Q  82 gaactcattgccgaaatcctgtcctttcttagtgtgaaaaccatcgtgcaactcaagtgtgtgagcaagtcatggaacattctcatttccaatccatcct 181  Q
    |||||||| || |||||||| || |||||||| ||||| ||||||   ||| ||||||| || ||||| |||||||||   ||||| ||| ||||| | |    
T  33568014 gaactcatagctgaaatcctttcttttcttagcgtgaagaccatcacacaattcaagtgcgtaagcaaatcatggaactcgctcatctccgatccaactt 33568113  T
Q  182 tcatcaagaagcatcttaagaagtcatcacaaaaccc 218  Q
    |  |||| | |||  |||||||||| |||||||||||    
T  33568114 ttgtcaaaatgcactttaagaagtcgtcacaaaaccc 33568150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 82 - 218
Target Start/End: Original strand, 36339247 - 36339383
Alignment:
Q  82 gaactcattgccgaaatcctgtcctttcttagtgtgaaaaccatcgtgcaactcaagtgtgtgagcaagtcatggaacattctcatttccaatccatcct 181  Q
    |||||||| ||||||||||| |  || ||||| ||||||||||| |||| | ||||||||||||||||||||||||||| |||||| ||  ||||| | |    
T  36339247 gaactcatcgccgaaatcctattgttacttagcgtgaaaaccattgtgcgattcaagtgtgtgagcaagtcatggaacactctcatctcagatccaactt 36339346  T
Q  182 tcatcaagaagcatcttaagaagtcatcacaaaaccc 218  Q
    ||||||| | ||| |||||||| || |||||||||||    
T  36339347 tcatcaaaatgcaccttaagaaatcttcacaaaaccc 36339383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 23085935 - 23086010
Alignment:
Q  145 agcaagtcatggaacattctcatttccaatccatccttcatcaagaagcatcttaagaagtcatcacaaaacccac 220  Q
    |||||||||||||||| |||| | ||| |||||  |||||| ||||| ||||||||||||||||||||||||||||    
T  23085935 agcaagtcatggaacactctcgtctccgatccaatcttcataaagaatcatcttaagaagtcatcacaaaacccac 23086010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 85 - 209
Target Start/End: Complemental strand, 11346075 - 11345951
Alignment:
Q  85 ctcattgccgaaatcctgtcctttcttagtgtgaaaaccatcgtgcaactcaagtgtgtgagcaagtcatggaacattctcatttccaatccatccttca 184  Q
    ||||| ||||||||||| || || ||||  ||||||||||| || ||| |||| || ||||||||||||||||||| |||||| ||| ||||| |||||     
T  11346075 ctcatagccgaaatcctatcattacttaacgtgaaaaccattgtccaattcaaatgcgtgagcaagtcatggaacactctcatctccgatccacccttcg 11345976  T
Q  185 tcaagaagcatcttaagaagtcatc 209  Q
    || | || || ||||| ||||||||    
T  11345975 tccaaaaacaccttaaaaagtcatc 11345951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 226
Target Start/End: Original strand, 23839870 - 23839981
Alignment:
Q  115 gtgaaaaccatcgtgcaactcaagtgtgtgagcaagtcatggaacattctcatttccaatccatccttcatcaagaagcatcttaagaagtcatcacaaa 214  Q
    |||||||||||| ||| | |||| |||||||||||||||||||||| |||||| ||| ||||| |||   |||| ||  | ||||| ||||| ||| | |    
T  23839870 gtgaaaaccatcttgcgattcaaatgtgtgagcaagtcatggaacactctcatctccgatccagcctatgtcaaaaaataccttaacaagtcgtcaaata 23839969  T
Q  215 acccacacctca 226  Q
    ||||||||||||    
T  23839970 acccacacctca 23839981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 182
Target Start/End: Complemental strand, 23848055 - 23847989
Alignment:
Q  116 tgaaaaccatcgtgcaactcaagtgtgtgagcaagtcatggaacattctcatttccaatccatcctt 182  Q
    ||||||||||| ||| | |||| |||||||||||||| ||||||| |||||| ||| ||||| ||||    
T  23848055 tgaaaaccatcctgcgattcaattgtgtgagcaagtcgtggaacactctcatctccgatccaacctt 23847989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 134 - 225
Target Start/End: Complemental strand, 17210 - 17119
Alignment:
Q  134 tcaagtgtgtgagcaagtcatggaacattctcatttccaatccatccttcatcaagaagcatcttaagaagtcatcacaaaacccacacctc 225  Q
    ||||||||||||||||||||||| ||  |||||| |||||||| | ||||||||| || || ||    || || ||||||||||||||||||    
T  17210 tcaagtgtgtgagcaagtcatggtactctctcatctccaatcccttcttcatcaaaaaacacctctttaaatcttcacaaaacccacacctc 17119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 134 - 225
Target Start/End: Complemental strand, 20713371 - 20713280
Alignment:
Q  134 tcaagtgtgtgagcaagtcatggaacattctcatttccaatccatccttcatcaagaagcatcttaagaagtcatcacaaaacccacacctc 225  Q
    ||||||||||||||||||||||| ||  |||||| |||||||| | ||||||||| || || ||    || || ||||||||||||||||||    
T  20713371 tcaagtgtgtgagcaagtcatggtactctctcatctccaatcccttcttcatcaaaaaacacctctttaaatcttcacaaaacccacacctc 20713280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 225
Target Start/End: Complemental strand, 17954625 - 17954482
Alignment:
Q  82 gaactcattgccgaaatcctgtcctttcttagtgtgaaaaccatcgtgcaactcaagtgtgtgagcaagtcatggaacattctcatttccaatccatcct 181  Q
    ||||| || ||||||||||| || || |||| |||| |||||||| |||||||||| || ||  |||| |||||||| | |||| | ||| |||||  ||    
T  17954625 gaactgatagccgaaatcctatctttccttaatgtggaaaccatcctgcaactcaaatgcgtttgcaaatcatggaaaactctcgtctccgatccaatct 17954526  T
Q  182 tcatcaagaagcatcttaagaagtcatcacaaaacccacacctc 225  Q
    |  |||| || ||||||||||| || |||||||| || ||||||    
T  17954525 ttgtcaaaaatcatcttaagaaatcctcacaaaagcctcacctc 17954482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 218
Target Start/End: Original strand, 4408 - 4544
Alignment:
Q  82 gaactcattgccgaaatcctgtcctttcttagtgtgaaaaccatcgtgcaactcaagtgtgtgagcaagtcatggaacattctcatttccaatccatcct 181  Q
    |||||||| || |||||||| || |||||||| ||||| ||||||   ||| ||||||| || ||||| |||||||||   ||||| ||| ||||| | |    
T  4408 gaactcatagctgaaatcctttcttttcttagcgtgaagaccatcacacaattcaagtgcgtaagcaaatcatggaactcgctcatctccgatccaactt 4507  T
Q  182 tcatcaagaagcatcttaagaagtcatcacaaaaccc 218  Q
    |  |||| | |||  |||||||||| |||||||||||    
T  4508 ttgtcaaaatgcactttaagaagtcgtcacaaaaccc 4544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University