View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11422_high_13 (Length: 355)
Name: NF11422_high_13
Description: NF11422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11422_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 39543274 - 39543597
Alignment:
| Q |
18 |
acctctgccctgaagataccacaaatgttggtccttcttctccaccagtgctgccacaataaatcctagccaatcccggaactggtcgatgctcttccac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39543274 |
acctctgccctgaagataccacaaatgttggtccttcttctccaccagtgctgccacaataaatcctagccaatccaggaactggtcgatgctcttccac |
39543373 |
T |
|
| Q |
118 |
ccaatcaattagacccaagaaatgctcctctgtcaccgccgcctccaaaaactcatgaactcgatctgccacccaacataacggattatcaaccagctct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
39543374 |
ccaatcaattagacccaagaaatgctcctctgtcactgctgcctccaaaaactcatgaactcgatcagccacccaacatagcggattatcaaccagctct |
39543473 |
T |
|
| Q |
218 |
tctgctaatctaccaccatagggaatcgaaagcacattcccaaaatatgaattcataagctcttctttgtttttgtcaccgttgcttagcctctttcttc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39543474 |
tctgctaatctaccaccatagggaatcgaaagcacattcccaaaatatgaattcataagctcttctttgtttttgtcaccgttgcttagcctctttcttc |
39543573 |
T |
|
| Q |
318 |
cgtcaaccacaagccccatttttg |
341 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
39543574 |
cgtcaaccacaagccccatttttg |
39543597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 39553293 - 39553616
Alignment:
| Q |
18 |
acctctgccctgaagataccacaaatgttggtccttcttctccaccagtgctgccacaataaatcctagccaatcccggaactggtcgatgctcttccac |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39553293 |
acctctgccctgaagatacaacaaatgttggtccttcttctccaccagtgctgccacaataaatcctagccaatccaggaactggtcgatgctcttccac |
39553392 |
T |
|
| Q |
118 |
ccaatcaattagacccaagaaatgctcctctgtcaccgccgcctccaaaaactcatgaactcgatctgccacccaacataacggattatcaaccagctct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
39553393 |
ccaatcaattagacccaagaaatgctcctctgtcactgctgcctccaaaaactcatgaactcgatcagccacccaacatagcggattatcaaccagctct |
39553492 |
T |
|
| Q |
218 |
tctgctaatctaccaccatagggaatcgaaagcacattcccaaaatatgaattcataagctcttctttgtttttgtcaccgttgcttagcctctttcttc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39553493 |
tctgctaatctaccaccatagggaatcgaaagcacattcccaaaatatgaattcataagctcttctttgtttttgtcaccgttgcttagcctctttcttc |
39553592 |
T |
|
| Q |
318 |
cgtcaaccacaagccccatttttg |
341 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
39553593 |
cgtcaaccacaagccccatttttg |
39553616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 39586400 - 39586723
Alignment:
| Q |
18 |
acctctgccctgaagataccacaaatgttggtccttcttctccaccagtgctgccacaataaatcctagccaatcccggaactggtcgatgctcttccac |
117 |
Q |
| |
|
|||| ||||| ||||| ||||||||||| ||||| ||| |||||||||| || ||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
39586400 |
acctttgcccagaagacaccacaaatgtcggtccatctgctccaccagttactccgcaataaatccttgccaatcccggaaccggtcgatgctcttccac |
39586499 |
T |
|
| Q |
118 |
ccaatcaattagacccaagaaatgctcctctgtcaccgccgcctccaaaaactcatgaactcgatctgccacccaacataacggattatcaaccagctct |
217 |
Q |
| |
|
|||||||||||| ||||||||||| || || || |||| |||||| ||||||||||||| | |||| |||||||||||||| || ||||| || ||| |
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| T |
39586500 |
ccaatcaattagtcccaagaaatgttcttccgtgtccgcaacctccacaaactcatgaacttgctctgtcacccaacataacgacttttcaacaagttct |
39586599 |
T |
|
| Q |
218 |
tctgctaatctaccaccatagggaatcgaaagcacattcccaaaatatgaattcataagctcttctttgtttttgtcaccgttgcttagcctctttcttc |
317 |
Q |
| |
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||| |||||||| || ||||||| | |||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
39586600 |
tctattaatctacaactatagggagttgaaagcacattcccaaaatacgaactcataaactcttctttgtttttgtcaccgttgcttaatctctttcttc |
39586699 |
T |
|
| Q |
318 |
cgtcaaccacaagccccatttttg |
341 |
Q |
| |
|
|||||||||||| ||||||||||| |
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| T |
39586700 |
cgtcaaccacaatccccatttttg |
39586723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 147
Target Start/End: Original strand, 17503158 - 17503234
Alignment:
| Q |
71 |
ccacaataaatcctagccaatcccggaactggtcgatgctcttccacccaatcaattagacccaagaaatgctcctc |
147 |
Q |
| |
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|||| ||||||| | |||||||| ||||| |||||||| |||||||||||||||| || || | |||||| ||||| |
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| T |
17503158 |
ccactataaatcttcgccaatccaggaacaggtcgatgtgcttccacccaatcaatgagccctaggaaatgttcctc |
17503234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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