View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11422_high_23 (Length: 251)
Name: NF11422_high_23
Description: NF11422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11422_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 16882253 - 16882024
Alignment:
| Q |
1 |
atatttcaaggtgcagtaaattttcattaaatattaatgtagaacaaatttacgacaaccataaaatgtattgatctgtaatatatgtagaaccttaata |
100 |
Q |
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| T |
16882253 |
atatttcaaggtgcagtaaattttcattaaatattaatgtagaacaaatttacgacaactataaaatatattgatccgtaatatatgtagaaccttaata |
16882154 |
T |
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| Q |
101 |
ttaactctaaaagtttggtctagtggtaaaatgacatatcttaaacatggaggtttcaggttcaagccccatcattgattttgaaatgaggtaaatgtaa |
200 |
Q |
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| T |
16882153 |
ttaactctaaaagtttggtctagtggtaaaataacatatcttgaacctagaggtttcaggttcaagctccatcattgattttgaaatgaggtaaatgtaa |
16882054 |
T |
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| Q |
201 |
tttcctttacaggggttctctgaatcctaa |
230 |
Q |
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||||||||| || |||||||||| |||||| |
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| T |
16882053 |
tttcctttatagaggttctctgagtcctaa |
16882024 |
T |
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Back To:
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 24252663 - 24252695
Alignment:
| Q |
111 |
aagtttggtctagtggtaaaatgacatatctta |
143 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
24252663 |
aagtttagtctagtggtaaaatgacatatctta |
24252695 |
T |
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