View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11422_high_28 (Length: 213)
Name: NF11422_high_28
Description: NF11422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11422_high_28 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 178; Significance: 3e-96; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 35927975 - 35928152
Alignment:
| Q |
18 |
ggcagttgatttatctcctgacttgtcatagtcagaagttgtgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaact |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35927975 |
ggcagttgatttatctcctgacttgtcatagtcagaagttgtgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaact |
35928074 |
T |
|
| Q |
118 |
gcatatttcataatgataaactggtaagttattcatgtctaagaataaatgcatcataagaaacaatttcattctatc |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35928075 |
gcatatttcataatgataaactggtaagttattcatgtctaagaataaatgcatcataagaaacaatttcattctatc |
35928152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 35910575 - 35910740
Alignment:
| Q |
18 |
ggcagttgatttatctcctgacttgtcatagtcagaagttgtgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaact |
117 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |||||||| ||||| || || ||| |
|
|
| T |
35910575 |
ggcagttgacttatctcctgatttgtcatagtcagatgttgtgtttgagtaggaaaatcctactcctgctggagattctaagaagagtacgttcgccact |
35910674 |
T |
|
| Q |
118 |
gcatatttcataatg--ataaactggtaagttattcatgtctaagaataaatgcatcataagaaacaat |
184 |
Q |
| |
|
||||||||||||||| |||| ||||||| ||||||||||| || ||||||||||||||||||||| |
|
|
| T |
35910675 |
gcatatttcataatgatataagttggtaagatattcatgtctcag---aaatgcatcataagaaacaat |
35910740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 35934789 - 35934929
Alignment:
| Q |
19 |
gcagttgatttatctcctgacttgtcatagtcagaagttgtgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaactg |
118 |
Q |
| |
|
||||| || |||||||||| || | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
35934789 |
gcagtggacttatctcctgcttttttatagtcagaagttgtgtttgagtaggaaaatcccactcctgctggagactctaagaagagtatatttgcaactg |
35934888 |
T |
|
| Q |
119 |
c--atatttcataatgataaactggtaagttattcatgtct |
157 |
Q |
| |
|
| |||||| ||||||||||| |||| || | ||||||||| |
|
|
| T |
35934889 |
catatattttataatgataaattggttagatgttcatgtct |
35934929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 35940351 - 35940468
Alignment:
| Q |
18 |
ggcagttgatttatctcctgacttgtcatagtcagaagttgtgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaact |
117 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| | |||||||||||| || ||||| ||||| || || ||| |
|
|
| T |
35940351 |
ggcagttgatttatctcctgatttgtcatagtcagatgttgtgtttgagtaggaaaatcctattcctgctggagattccaagaagagtacgttcgccact |
35940450 |
T |
|
| Q |
118 |
gcatatttcataatgata |
135 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
35940451 |
gcatatttcataatgata |
35940468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 28 - 135
Target Start/End: Original strand, 35915020 - 35915127
Alignment:
| Q |
28 |
ttatctcctgacttgtcatagtcagaagttgtgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaactgcatatttca |
127 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| || ||||| ||||||||||||||||||||||||| |
|
|
| T |
35915020 |
ttatctcctgaattgtcatagtcagatgttgtgtttgagtaggaaaatcctactcctgccggagattccaagaagagtacatttgcaactgcatatttca |
35915119 |
T |
|
| Q |
128 |
taatgata |
135 |
Q |
| |
|
||| |||| |
|
|
| T |
35915120 |
taaggata |
35915127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 35921383 - 35921494
Alignment:
| Q |
19 |
gcagttgatttatctcctgacttgtcatagtcagaagttgtgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaactg |
118 |
Q |
| |
|
||||| || ||||||||||| ||||||||||| || | ||||||||| ||||||||||| || ||||||||||| || ||||| ||||||||||| |||| |
|
|
| T |
35921383 |
gcagtggacttatctcctgaattgtcatagtccgatgatgtgtttgagtaggaaaatcctacccctgctggagattccaagaagagtacatttgccactg |
35921482 |
T |
|
| Q |
119 |
catatttcataa |
130 |
Q |
| |
|
|||||||||||| |
|
|
| T |
35921483 |
catatttcataa |
35921494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 6208979 - 6209039
Alignment:
| Q |
59 |
tgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaactgc |
119 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| || | |||||||| ||||| |
|
|
| T |
6208979 |
tgtttgaataggaaaatccaactcctgctggagactctaaaaagataacatttgccactgc |
6209039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 97
Target Start/End: Original strand, 6178241 - 6178277
Alignment:
| Q |
61 |
tttgaataggaaaatcccactcctgctggagactcta |
97 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
6178241 |
tttgaataagaaaatccaactcctgctggagactcta |
6178277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University