View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11422_high_9 (Length: 444)
Name: NF11422_high_9
Description: NF11422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11422_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 20 - 432
Target Start/End: Complemental strand, 53431213 - 53430788
Alignment:
| Q |
20 |
ggacttccatggcatgtccacatgtttcaggccttgcaggaagcatcaaatctagaaaccctacttggagtgcctccgcaattagatcagccatcatgac |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53431213 |
ggacttccatggcatgtccacatgtttcaggccttgcaggaagcatcaaatctagaaaccctacttggagtgcctccgcaattagatcagccatcatgac |
53431114 |
T |
|
| Q |
120 |
ctcaggtatatctgtcaactcaat-------------gtatgtatgtaaatgtaatcctatctatcaactcataaattcctattttttctaaattcagca |
206 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53431113 |
ctcaggtatatctgtcaactcaatttccctataaaatgtatgtatgtaaatgtaatcctatctatcaactcataaattcctattttttctaaattcagca |
53431014 |
T |
|
| Q |
207 |
actcaagttaacaacttgaaggatcccattacaacagatttagggtcgattgccacaccttatgactatggagcaggtgaaataacaccaactgaatcat |
306 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53431013 |
actcaagttaacaacttgaaggatcccattacaacagatttagggtcgattgccacaccttatgactatggagcaggtgaaataacaccaactgaatcat |
53430914 |
T |
|
| Q |
307 |
accgaccaggtcttgtttatgaaaccagcaccattgactacttgaacttcttgtgttacataggatataacacaacaactattaaggttatttcaaaaac |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53430913 |
accgaccaggtcttgtttatgaaaccagcaccattgactacttgaacttcttgtgttacataggatataacacaacaactattaaggttatttcaaaaac |
53430814 |
T |
|
| Q |
407 |
tgtccctgataatttcaattgcccta |
432 |
Q |
| |
|
|||||||||||||||||| ||||||| |
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| T |
53430813 |
tgtccctgataatttcaactgcccta |
53430788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 192 - 432
Target Start/End: Complemental strand, 26095415 - 26095175
Alignment:
| Q |
192 |
tttctaaattcagcaactcaagttaacaacttgaaggatcccattacaacagatttagggtcgattgccacaccttatgactatggagcaggtgaaataa |
291 |
Q |
| |
|
||||||||| ||||||||||| ||||||| |||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||| || | |||| |
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| T |
26095415 |
tttctaaatgcagcaactcaaattaacaatatgaagggtcccattgcaacagatttagggttaattgccacaccttatgactatggagctggggggataa |
26095316 |
T |
|
| Q |
292 |
caccaactgaatcataccgaccaggtcttgtttatgaaaccagcaccattgactacttgaacttcttgtgttacataggatataacacaacaactattaa |
391 |
Q |
| |
|
|| |||||||| || || |||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| |
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| T |
26095315 |
caacaactgaaccactccaaccagggctcgtttatgaaaccagcaccattgactacttgaacttcttgtgttatataggatataacacaaccaccattaa |
26095216 |
T |
|
| Q |
392 |
ggttatttcaaaaactgtccctgataatttcaattgcccta |
432 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||| |
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|
| T |
26095215 |
ggttatttcaaaaactgtccctgatagtttcaactgcccta |
26095175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 189 - 430
Target Start/End: Original strand, 48374785 - 48375026
Alignment:
| Q |
189 |
ttttttctaaattcagcaactcaagttaacaacttgaaggatcccattacaacagatttagggtcgattgccacaccttatgactatggagcaggtgaaa |
288 |
Q |
| |
|
||||||| | || ||||||| ||| |||| || |||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||| || | |
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|
| T |
48374785 |
ttttttcgatatgcagcaacacaaattaataatatgaaggctcccattactacagatttagggtcagttgccacaccttatgactatggagcaggggaca |
48374884 |
T |
|
| Q |
289 |
taacaccaactgaatcataccgaccaggtcttgtttatgaaaccagcaccattgactacttgaacttcttgtgttacataggatataacacaacaactat |
388 |
Q |
| |
|
||||| ||| |||||||| || ||||||||| ||||||||||| |||||||||||||||||||| | |||||||||||||||||| |||||||| ||||| |
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| T |
48374885 |
taacaacaattgaatcattccaaccaggtctcgtttatgaaactagcaccattgactacttgaattacttgtgttacataggatacaacacaaccactat |
48374984 |
T |
|
| Q |
389 |
taaggttatttcaaaaactgtccctgataatttcaattgccc |
430 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
48374985 |
taaggttatttcaaaaactgtccctgatactttcaactgccc |
48375026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 190 - 432
Target Start/End: Complemental strand, 53423068 - 53422825
Alignment:
| Q |
190 |
tttttctaaattcagcaactcaagttaacaacttgaaggatcccattacaacagatttagggtcgattgccacaccttatgactatggagcaggtgaaat |
289 |
Q |
| |
|
|||||| |||| ||||||||||| ||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| |
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|
| T |
53423068 |
tttttcaaaatgcagcaactcaaattaacaatatgaaggatcccattacaacggatttagggtcaattgccacaccttatgactatggagcaggggaaat |
53422969 |
T |
|
| Q |
290 |
aacaccaactgaatcataccgaccaggtcttgtttatgaaaccagcaccattgactacttgaacttcttgtgttacataggatataacacaa-caactat |
388 |
Q |
| |
|
||| | ||||||||| || |||||| || |||||||||||||||||||||||||||||||||| |||||||||| ||||||| || |||| | || || |
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|
| T |
53422968 |
tacaatatctgaatcattccaaccagggctagtttatgaaaccagcaccattgactacttgaactacttgtgttacctaggatacaatacaacccacaat |
53422869 |
T |
|
| Q |
389 |
taaggttatttcaaaaactgtccctgataatttcaattgcccta |
432 |
Q |
| |
|
||||| ||| |||||||| ||||||| || ||||| |||||||| |
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|
| T |
53422868 |
taaggctatctcaaaaaccgtccctggtagtttcagttgcccta |
53422825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 190 - 430
Target Start/End: Complemental strand, 53307870 - 53307630
Alignment:
| Q |
190 |
tttttctaaattcagcaactcaagttaacaacttgaaggatcccattacaacagatttagggtcgattgccacaccttatgactatggagcaggtgaaat |
289 |
Q |
| |
|
||||| ||||| ||||| ||||| ||||||| |||||| ||||||||| || |||| ||||| ||||||||||||||||||||||||||||| ||||| |
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|
| T |
53307870 |
tttttataaatgcagcagctcaaattaacaatatgaaggctcccattaccacgaatttggggtcaattgccacaccttatgactatggagcaggagaaat |
53307771 |
T |
|
| Q |
290 |
aacaccaactgaatcataccgaccaggtcttgtttatgaaaccagcaccattgactacttgaacttcttgtgttacataggatataacacaacaactatt |
389 |
Q |
| |
|
|||| |||||||| ||| || ||| || || ||||||||||| ||||||||||||||| | |||| ||||||||||||||||| || ||||| || | |
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|
| T |
53307770 |
aacaacaactgaaccattccaacccgggctagtttatgaaactagcaccattgactacctaaactacttgtgttacataggattgaatacaaccacggtg |
53307671 |
T |
|
| Q |
390 |
aaggttatttcaaaaactgtccctgataatttcaattgccc |
430 |
Q |
| |
|
||| |||| || ||||| | |||||||| |||||| ||||| |
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|
| T |
53307670 |
aagattatctctaaaaccgcccctgatagtttcaactgccc |
53307630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 26095727 - 26095622
Alignment:
| Q |
22 |
acttccatggcatgtccacatgtttcaggccttgcaggaagcatcaaatctagaaaccctacttggagtgcctccgcaattagatcagccatcatgacct |
121 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||| |
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|
| T |
26095727 |
acttccatgtcatgcccacatgtttcaggccttgcaggtagcatcaaatctaggaaccctacttggagtgcctctgcaatcagatcagccatcatgacct |
26095628 |
T |
|
| Q |
122 |
caggta |
127 |
Q |
| |
|
| |||| |
|
|
| T |
26095627 |
ccggta |
26095622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 53423558 - 53423456
Alignment:
| Q |
20 |
ggacttccatggcatgtccacatgtttcaggccttgcaggaagcatcaaatctagaaaccctacttggagtgcctccgcaattagatcagccatcatgac |
119 |
Q |
| |
|
||||||| ||| |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| |
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|
| T |
53423558 |
ggacttctatgtcatgcccacatgtttcaggccttgcaggcagcattaaatctagaaaccctacttggagtgcctctgcaatcagatcggccatcatgac |
53423459 |
T |
|
| Q |
120 |
ctc |
122 |
Q |
| |
|
||| |
|
|
| T |
53423458 |
ctc |
53423456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 48374550 - 48374647
Alignment:
| Q |
22 |
acttccatggcatgtccacatgtttcaggccttgcaggaagcatcaaatctagaaaccctacttggagtgcctccgcaattagatcagccatcatgac |
119 |
Q |
| |
|
||||||||| |||| ||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||| |
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|
| T |
48374550 |
acttccatgtcatgcccacatgtttcgggccttgcaggtagcatcaaatctaggaaccctacttggagtgcctctgcaatcagatcagccatcatgac |
48374647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 53308308 - 53308221
Alignment:
| Q |
20 |
ggacttccatggcatgtccacatgtttcaggccttgcaggaagcatcaaatctagaaaccctacttggagtgcctccgcaattagatc |
107 |
Q |
| |
|
||||||| ||| |||| || |||||||||||| ||||||| || || |||| || |||||||| |||||||||||| ||||| ||||| |
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|
| T |
53308308 |
ggacttctatgtcatgccctcatgtttcaggcgttgcaggcagaattaaatttaaaaaccctatttggagtgcctctgcaatcagatc |
53308221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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