View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11422_low_1 (Length: 758)
Name: NF11422_low_1
Description: NF11422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11422_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 474; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 198 - 749
Target Start/End: Original strand, 8547833 - 8548384
Alignment:
| Q |
198 |
atagatagatagagtctggatggtgatcacaagggtgttgaaatttttataaggaaattgctgtttatcgcgagagaaaattcaccgaatatttcacgac |
297 |
Q |
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| T |
8547833 |
atagatagatagagtctggatggtgatcacaagggtgttgaaatttttataaggaaattgctgtttatcgcgagagaaaatccaccgaatatttcacgac |
8547932 |
T |
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| Q |
298 |
cgtgtatttatttctatgcatttcttaaactgcacccatgaatcttatgttttccgctgataaagaaatttaattggcttaatgcattttgtcattctct |
397 |
Q |
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| T |
8547933 |
cgtttatttatttatatgcatttcttaaactgcacccatgaatcttatgttttccgctgataaagaaatttaattggcttaatgcattttgtcattctct |
8548032 |
T |
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| Q |
398 |
caggataaaatatctcggaatgaatagcattgctctttttataattgtaaaacactttttgcggtgaaatgattaggaatgaattaattcgtgattaagg |
497 |
Q |
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| T |
8548033 |
caggataaaatatctcgggatgaatagcattgccctttttataattgtaaaacacttcttgcggtgaaatgattaggaatgaattaattcgtgattaagg |
8548132 |
T |
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| Q |
498 |
ccagagaagcaaacgtaatgatgactaacaagagtttagaagggtgctccttcnnnnnnngagcacaaccagttggttaatgctcatgcttttatagatt |
597 |
Q |
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| T |
8548133 |
ccagagaagcaaacgtaatgatgactaacaagagtttagaagggtgctccttctttttttgagcacaaccagttggttaatgctcatgcttttatagatt |
8548232 |
T |
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| Q |
598 |
aaaaagaggtttaaatatacatttggatcctacaaatataaacattttctgtttttagtctatnnnnnnnttgtcttattttagtccttgtaaatattat |
697 |
Q |
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| T |
8548233 |
aaatagaggtttaaatatacatttggatcctacaaatataaacattttctgtttttagtctataaaaaaattgtcttattttagtccttgtaaatattat |
8548332 |
T |
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| Q |
698 |
taaaattggttcctgcaatacattgtaatattaattttcttccttcatctca |
749 |
Q |
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| T |
8548333 |
aaaaattggttcctgcaatacattgtaatattaattttcttcctttatctca |
8548384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 8547615 - 8547808
Alignment:
| Q |
19 |
tagggatctaaacattaattaaaccttaaaaagtatattctacaaaaataagtcgtaa-----------aactttaatatttacttatttgcaaggttcc |
107 |
Q |
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| T |
8547615 |
tagggatctaaagattaattaaaccttagaaagtatattctacaaaaataagtcgtaaaacttttgtaaaactttaatatttacttatttgcaaggttcc |
8547714 |
T |
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| Q |
108 |
acagccaaaagggttgcaaattcagttcatgtttttcttggaatgatgacatgttttgctcgttttgaagtggtaattcatggtcgatggatag |
201 |
Q |
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| T |
8547715 |
acagccaaaagggttacaaattcagttcatgtttttcttggaatgatgacatgttttgctcgttttgaagtggtaatttatggtcgatggatag |
8547808 |
T |
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Back To:
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