View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11422_low_11 (Length: 420)
Name: NF11422_low_11
Description: NF11422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11422_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 43604427 - 43604014
Alignment:
| Q |
1 |
taattcagttgaattccctttgctcgagcacctacttatacatatattggtgtatcattttcttcaaccaatttgaatgattctctcttcacttttatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43604427 |
taattcagttgaattccctttgctcgagcacctacttatacatatattggtgtatcattttcttcaaccaatttgaatgattctctcttcacttttatat |
43604328 |
T |
|
| Q |
101 |
gcttccctctgaagagtaacattttctcattggttacataagtgagtattattgtttaaatcccttgtacaattcaaaatacttgttcccaacttgggac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43604327 |
gcttccctctgaagagtaacattttctcattggttacataagtgagtattattgttgaaatcccttgtacaattcaaaatacttgttcccaacttgggac |
43604228 |
T |
|
| Q |
201 |
aaacactgattattatcaggggcattctttgtaagagtgacacgccaaagcttcaagacaccatcaaggcttccagtacaaacagtacaagaatcttcat |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43604227 |
aaacactgattattatcaggggcattctttgtaagagtgacacgccaaagcttcaagacaccatcaaggcttccagtacaaacagtacaagaatcttcat |
43604128 |
T |
|
| Q |
301 |
tatcatcttccttaaccaagcatcctcctaaaaaagctgttacacacctaattggtcctctatgaccagccaaaacagctaaacaaacatgttgtccatc |
400 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43604127 |
tatcatcttccttaaccaaacatcctcctaaaaaagctgttacagatctaattggtcctctatgaccagccaaaacagctaaacaaacatgttgtccatc |
43604028 |
T |
|
| Q |
401 |
acgttctctgctcc |
414 |
Q |
| |
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||||||||| |||| |
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| T |
43604027 |
acgttctctactcc |
43604014 |
T |
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