View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11422_low_12 (Length: 381)
Name: NF11422_low_12
Description: NF11422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11422_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 77 - 362
Target Start/End: Original strand, 42671546 - 42671833
Alignment:
| Q |
77 |
tatataatcattttgtaattgaaagaggttaaaa-aatgtaaagccttgttgagttggaataacatctgacagcatatataaagtttagaatatattact |
175 |
Q |
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| T |
42671546 |
tatataatcattttgtaattgaaagaggttaaaaaaatgtaaagccttgttgagttggaataacatctgacagcatatataaagtttagaatatattact |
42671645 |
T |
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| Q |
176 |
tttctatatgtgattgtcaagaacgtgactaagccataaacatcagcttggtacagctcattttgtggatttggattgcttactgtaataaatccatgca |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42671646 |
tttctatatgtgattgtcaagaacgtgactaagccataaacatcagcttggtacagctcattttgtggatttggattgcttactgtaataaatccatgca |
42671745 |
T |
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| Q |
276 |
ttcatacaaatagaaaacacattttgata-ttttttaactccaaaatatcgtgcttttcaagcctagattgtctgatcttgatccaat |
362 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42671746 |
ttcatacaaatagaaaacacattttgatatttttttaactccaaaatatcgtgcttttcaagcctagattgtctgatcttgatccaat |
42671833 |
T |
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