View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11422_low_18 (Length: 277)
Name: NF11422_low_18
Description: NF11422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11422_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 377031 - 377291
Alignment:
| Q |
1 |
tcaagttggtcaagagaaaaagatgaccaaagcatgcaaagaatttgatcaatttatatattcaaatatagagtccaaaagagtggagctaaggaaaggt |
100 |
Q |
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| T |
377031 |
tcaagttggtcaagagaaaaagatgaccaaagcatgcaaagaatttgatcaatttatatattcaaatatagagtccaaaagagtggagctaaggaaaggt |
377130 |
T |
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| Q |
101 |
accaaaaatattgatgaaatgggtgatttgttaaccactttgatgaatcaagagaagggatcacaagtagtacaacatgaccacaagtttctaagagatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
377131 |
accaaaaatattgatgaaatgggtgatttgttaaccactttgatgaatgaagagaagggatcacaagtagtacaacatgacgacaagtttctaagagatg |
377230 |
T |
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| Q |
201 |
ctgctttcaatctctttgtagccggaagagatactataacttcagcgcttacatggttatt |
261 |
Q |
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| T |
377231 |
ctgctttcaatctctttgtagccggaagagatactataacttcagcgcttacatggttatt |
377291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 347465 - 347213
Alignment:
| Q |
1 |
tcaagttggtcaagagaaaaagatgaccaaagcatgcaaagaatttgatcaatttatatattcaaatatagagtccaaaagagtggagctaaggaaaggt |
100 |
Q |
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| T |
347465 |
tcaaattggtgaagagaaaaaaatgaccaaagcatgcaaagtatttgatcaatttgtatatgcaaatatagaatctagaagaaaggacataagaaaatgt |
347366 |
T |
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| Q |
101 |
accaaaaatattgatgaaatgggtgatttgttaaccactttgatgaatcaagagaagggatcacaagtagtacaacatgaccacaagtttctaagagatg |
200 |
Q |
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| T |
347365 |
agcaaaaatatgga---aatggttgatttgctaacaactttgatgaaagaagagaagggctcacaagtagtagtacatgatgataagtttctaagagatg |
347269 |
T |
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| Q |
201 |
ctgctttcaatctctttgtagccggaagagatactataacttcagcgcttacatgg |
256 |
Q |
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| T |
347268 |
tcgcattcaatctttttgtagccgggagagatactataacttcagcgcttacatgg |
347213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 356124 - 355872
Alignment:
| Q |
1 |
tcaagttggtcaagagaaaaagatgaccaaagcatgcaaagaatttgatcaatttatatattcaaatatagagtccaaaagagtggagctaaggaaaggt |
100 |
Q |
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|||| ||||| |||||||||| |||||||| ||||||||| | |||||||||| ||||| |||||||| |||| || || | |||||||| ||| || |
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| T |
356124 |
tcaaattggtgaagagaaaaatatgaccaaggcatgcaaaacctatgatcaatttgtatatgcaaatataaagtcaaagagggaagagctaagcaaatgt |
356025 |
T |
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| Q |
101 |
accaaaaatattgatgaaatgggtgatttgttaaccactttgatgaatcaagagaagggatcacaagtagtacaacatgaccacaagtttctaagagatg |
200 |
Q |
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| T |
356024 |
agaaaaaata---atgagatggttgatttgctaacaactttgatgaaagaagaaaaggggtcacaagtagtaatgcatgatgataagtttttgagggatg |
355928 |
T |
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| Q |
201 |
ctgctttcaatctctttgtagccggaagagatactataacttcagcgcttacatgg |
256 |
Q |
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||| ||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
355927 |
ttgcattcaatctctttgtagcggggagagatactataacttcagcgcttacatgg |
355872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 183 - 261
Target Start/End: Original strand, 337462 - 337540
Alignment:
| Q |
183 |
acaagtttctaagagatgctgctttcaatctctttgtagccggaagagatactataacttcagcgcttacatggttatt |
261 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| || |||||||| |||||||| ||||||||||||||||| |
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| T |
337462 |
acaagtttctaagagatgctgcattcaatctctttgtagcggggagagataccataacttccgcgcttacatggttatt |
337540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 183 - 261
Target Start/End: Original strand, 341500 - 341578
Alignment:
| Q |
183 |
acaagtttctaagagatgctgctttcaatctctttgtagccggaagagatactataacttcagcgcttacatggttatt |
261 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||| |||| |
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| T |
341500 |
acaagtttctaagagatgctgcattcaatctctttgtagctggaagagataccataacttctgcgcttacatggctatt |
341578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 183 - 261
Target Start/End: Original strand, 333208 - 333286
Alignment:
| Q |
183 |
acaagtttctaagagatgctgctttcaatctctttgtagccggaagagatactataacttcagcgcttacatggttatt |
261 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| || |||||||| |||||||| || |||||||||||||| |
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| T |
333208 |
acaagtttctaagagatgctgcattcaatctctttgtagcggggagagataccataacttccgcccttacatggttatt |
333286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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