View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11422_low_19 (Length: 268)
Name: NF11422_low_19
Description: NF11422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11422_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 9603643 - 9603391
Alignment:
| Q |
1 |
catcagtgcggaaaatttccttgagtactggtaagggactgattttgctcaatatatgtgtaggaagttcaattccaccttcaaataagtcacgcacttc |
100 |
Q |
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| T |
9603643 |
catcagtgcggaaaatttccttgagtactggtaagggactgattttgctcaatatatgtgtaggaagttcaattccaccttcaaataagtcacgcacttc |
9603544 |
T |
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| Q |
101 |
atcgaagctatcaaactcatttggagtgaaattcaaatcaaagattacagatttaaacaaaggtaacacatcttgagacaatgattttattccatatgta |
200 |
Q |
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| T |
9603543 |
atcgaagctatcaaactcatttggagtgaaattcaaatcaaagattacagatttaaacaaaggtaacacatcttgagacaatgattttattccatatgta |
9603444 |
T |
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| Q |
201 |
aggaagtcagatgacttcaagtgtccaaaattttcatctcttggaacatacat |
253 |
Q |
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| T |
9603443 |
aggaagtcagatgacttcaagtgtccaaaattttcatctcttggaacatacat |
9603391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 9589164 - 9589103
Alignment:
| Q |
181 |
atgattttattccatatgtaaggaagtcagatgacttcaagtgtccaaaattttcatctctt |
242 |
Q |
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| T |
9589164 |
atgattttaatccgtatgtaaggaagtctgatgactttaagtgaccaaaattttcatctctt |
9589103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 6 - 250
Target Start/End: Original strand, 6451698 - 6451942
Alignment:
| Q |
6 |
gtgcggaaaatttccttgagtactggtaagggactgattttgctcaatatatgtgtaggaagttcaattccaccttcaaataagtc-acgcacttcatcg |
104 |
Q |
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| T |
6451698 |
gtgcggaggatttccttaagggctggcaaggggctgatttggctgagtatatctgtaggaagcttaattccaccttcgaa-aagtccacgcacttcatcg |
6451796 |
T |
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| Q |
105 |
aagctatcaaactcatttggagtgaaattcaaatcaaagattacagatttaaacaaaggtaacacatcttgagacaatgattttattccatatgtaagga |
204 |
Q |
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| T |
6451797 |
aagctatcaaactcattcggggtgaaattcagatcaaaaattacagattgtaacaaaggcaaaacgtcttgtgacaatgactttattccatacataagaa |
6451896 |
T |
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| Q |
205 |
agtcagatgacttcaagtgtccaaaattttcatctcttggaacata |
250 |
Q |
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| T |
6451897 |
agtctgatgacttcaagtgaccaaaattttcatctcttggaacata |
6451942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 3 - 250
Target Start/End: Original strand, 6457785 - 6458032
Alignment:
| Q |
3 |
tcagtgcggaaaatttccttgagtactggtaagggactgattttgctcaatatatgtgtaggaagttcaattccaccttcaaataagtc-acgcacttca |
101 |
Q |
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| T |
6457785 |
tcagtgcgaaagatttccttaagggccggtaagggactaatttgactaagtatatctgtaggaagcttaatcccaccttcgaa-aagtccacgtacttca |
6457883 |
T |
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| Q |
102 |
tcgaagctatcaaactcatttggagtgaaattcaaatcaaagattacagatttaaacaaaggtaacacatcttgagacaatgattttattccatatgtaa |
201 |
Q |
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| T |
6457884 |
tcgaagctatcgaactcatttggtgtgaaattgaggtcaaaaatcacagatttaaacaatggtatgacattttgagacagtgattttattccatacataa |
6457983 |
T |
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| Q |
202 |
ggaagtcagatgacttcaagtgtccaaaattttcatctcttggaacata |
250 |
Q |
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| T |
6457984 |
ggaagtctgatgacttcaagtgaccaaaattttcatctcttggaacata |
6458032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 96 - 252
Target Start/End: Original strand, 42693970 - 42694126
Alignment:
| Q |
96 |
acttcatcgaagctatcaaactcatttggagtgaaattcaaatcaaagattacagatttaaacaaaggtaacacatcttgagacaatgattttattccat |
195 |
Q |
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|||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| | || ||| | ||||| |||||| | || ||| | ||||| |
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| T |
42693970 |
acttcatcaaagctatcaaactcatttggtgtgaaatttaaatcaaagattacagactctaatgcagggaccacattttgagatactgctttcagtccat |
42694069 |
T |
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| Q |
196 |
atgtaaggaagtcagatgacttcaagtgtccaaaattttcatctcttggaacataca |
252 |
Q |
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| T |
42694070 |
aagtaagaaaatctgatgatttcaagtgaccaaaagcttcatctcttggaagataca |
42694126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 250
Target Start/End: Complemental strand, 42687776 - 42687709
Alignment:
| Q |
183 |
gattttattccatatgtaaggaagtcagatgacttcaagtgtccaaaattttcatctcttggaacata |
250 |
Q |
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| T |
42687776 |
gattttattccatatgtgagaaagtctgaggacttcaagtgaccaaaattttcatctcttggaacata |
42687709 |
T |
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