View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11422_low_26 (Length: 239)

Name: NF11422_low_26
Description: NF11422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11422_low_26
NF11422_low_26
[»] chr7 (3 HSPs)
chr7 (94-224)||(2853900-2854030)
chr7 (1-96)||(2853690-2853785)
chr7 (31-93)||(21253106-21253168)
[»] chr2 (4 HSPs)
chr2 (18-79)||(13724138-13724199)
chr2 (11-78)||(10069236-10069303)
chr2 (3-93)||(16734802-16734892)
chr2 (18-78)||(27279988-27280048)
[»] scaffold0650 (1 HSPs)
scaffold0650 (18-80)||(21-83)
[»] chr3 (2 HSPs)
chr3 (18-96)||(9213532-9213610)
chr3 (3-78)||(34988109-34988184)
[»] chr1 (2 HSPs)
chr1 (7-80)||(40676821-40676894)
chr1 (18-80)||(3739836-3739898)
[»] chr5 (4 HSPs)
chr5 (18-77)||(39030589-39030648)
chr5 (18-96)||(11574116-11574194)
chr5 (20-77)||(3549585-3549642)
chr5 (3-54)||(14825555-14825604)
[»] chr4 (5 HSPs)
chr4 (31-78)||(41594688-41594735)
chr4 (3-76)||(21636144-21636217)
chr4 (18-79)||(44900113-44900174)
chr4 (7-51)||(9876700-9876744)
chr4 (22-74)||(35663952-35664004)
[»] chr8 (1 HSPs)
chr8 (58-96)||(28999124-28999162)


Alignment Details
Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 94 - 224
Target Start/End: Original strand, 2853900 - 2854030
Alignment:
Q  94 aattctaccaaattttgctatctttgctagctgagagtgaagcagatgccaacctaaagacacctcgcgctgcagaaacaaagactacatacaagcatga 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  2853900 aattctaccaaattttgctatctttgctagctgagagtgaagcagatgccaacttaaagacacctcgcgctacagaaacaaagactacatacaagcatga 2853999  T
Q  194 aagcttaaaaaattgtcaatactaggaagtt 224  Q
    |||||||||||||||||||||||||||||||    
T  2854000 aagcttaaaaaattgtcaatactaggaagtt 2854030  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 2853690 - 2853785
Alignment:
Q  1 tgtaagaaaaatttgattcaacaaaagtatatgtatttggttaaaaaattggaccatatacatcaatttttgttgaccaagctgtcttttataaat 96  Q
    ||||||| |||||||  ||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||| || ||||||||||||    
T  2853690 tgtaagagaaatttggatcaacaaaagtatatgtatctagttaaaaaattgaaccatatacatcaatttttgttgaccaaactatcttttataaat 2853785  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 21253168 - 21253106
Alignment:
Q  31 atgtatttggttaaaaaattggaccatatacatcaatttttgttgaccaagctgtcttttata 93  Q
    |||||||||||||||||||||||||| |||||| || ||||||| ||| | || |||||||||    
T  21253168 atgtatttggttaaaaaattggaccaaatacattaaattttgttaacctaactttcttttata 21253106  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 13724138 - 13724199
Alignment:
Q  18 tcaacaaaagtatatgtatttggttaaaaaattggaccatatacatcaatttttgttgacca 79  Q
    |||||||||||  |||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  13724138 tcaacaaaagttgatgtatttggttaaaaaattggaccagatacatcaacttttgttgacca 13724199  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 10069236 - 10069303
Alignment:
Q  11 atttgattcaacaaaagtatatgtatttggttaaaaaattggaccatatacatcaatttttgttgacc 78  Q
    |||||| |||| |||||| ||||||| ||||||||||||||||| | |||||| || |||||||||||    
T  10069236 atttgagtcaataaaagtttatgtatctggttaaaaaattggactagatacattaacttttgttgacc 10069303  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 93
Target Start/End: Complemental strand, 16734892 - 16734802
Alignment:
Q  3 taagaaaaatttgattcaacaaaagtatatgtatttggttaaaaaattggaccatatacatcaatttttgttgaccaagctgtcttttata 93  Q
    ||||| ||| |||| | |||||||||  ||||||||||||||||| |  | ||| ||||||||| ||||||||||||| || ||| |||||    
T  16734892 taagagaaagttgagtaaacaaaagttgatgtatttggttaaaaattcagtccagatacatcaacttttgttgaccaaactttctcttata 16734802  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 27280048 - 27279988
Alignment:
Q  18 tcaacaaaagtatatgtatttggttaaaaaattggaccatatacatcaatttttgttgacc 78  Q
    |||||||||||  |||||| ||||||||| ||| ||||| ||||||||| |||| ||||||    
T  27280048 tcaacaaaagttaatgtatctggttaaaacattagaccagatacatcaacttttcttgacc 27279988  T

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Target: scaffold0650 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 21 - 83
Alignment:
Q  18 tcaacaaaagtatatgtatttggttaaaaaattggaccatatacatcaatttttgttgaccaa 80  Q
    |||||||||||  ||||||||||||||||| || | ||| ||||||||| |||||||||||||    
T  21 tcaacaaaagttgatgtatttggttaaaaatttagtccaaatacatcaacttttgttgaccaa 83  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 9213610 - 9213532
Alignment:
Q  18 tcaacaaaagtatatgtatttggttaaaaaattggaccatatacatcaatttttgttgaccaagctgtcttttataaat 96  Q
    ||||||||| |  ||||||||||||| |||||| | ||| ||||||||| |||||||||| ||  ||||||||||||||    
T  9213610 tcaacaaaaattgatgtatttggttataaaattagtccagatacatcaacttttgttgactaaaatgtcttttataaat 9213532  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 34988184 - 34988109
Alignment:
Q  3 taagaaaaatttgattcaacaaaagtatatgtatttggttaaaaaattggaccatatacatcaatttttgttgacc 78  Q
    ||||||| |||||| ||||||| |||  |||||| | ||||||||| ||||||| ||| ||||| |||||||||||    
T  34988184 taagaaatatttgagtcaacaatagttgatgtatctagttaaaaaagtggaccagatagatcaacttttgttgacc 34988109  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 40676894 - 40676821
Alignment:
Q  7 aaaaatttgattcaacaaaagtatatgtatttggttaaaaaattggaccatatacatcaatttttgttgaccaa 80  Q
    |||||||| | |||||||||||  |||||| || |||| ||||||||| | ||||||| |||||||||||||||    
T  40676894 aaaaatttcagtcaacaaaagttaatgtatatgattaacaaattggactaaatacatccatttttgttgaccaa 40676821  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 3739898 - 3739836
Alignment:
Q  18 tcaacaaaagtatatgtatttggttaaaaaattggaccatatacatcaatttttgttgaccaa 80  Q
    |||||||||||  ||||||||||||||||| ||| |||| |||||| || ||| |||||||||    
T  3739898 tcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaactttcgttgaccaa 3739836  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 39030589 - 39030648
Alignment:
Q  18 tcaacaaaagtatatgtatttggttaaaaaattggaccatatacatcaatttttgttgac 77  Q
    |||||||||||  ||||||||||||||||| ||| |||| |||||| || ||||||||||    
T  39030589 tcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaacttttgttgac 39030648  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 11574116 - 11574194
Alignment:
Q  18 tcaacaaaagtatatgtatttggttaaaaaattggaccatatacatcaatttttgttgaccaagctgtcttttataaat 96  Q
    |||||||||||  |||||| | ||||| ||||||||||| |||  |||||||||||||||| |  ||||| ||||||||    
T  11574116 tcaacaaaagttaatgtatctagttaacaaattggaccagatatttcaatttttgttgacctaaatgtctcttataaat 11574194  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 3549585 - 3549642
Alignment:
Q  20 aacaaaagtatatgtatttggttaaaaaattggaccatatacatcaatttttgttgac 77  Q
    |||||||||  ||||||| ||||||||| || ||||| |||||| |||||||||||||    
T  3549585 aacaaaagttgatgtattcggttaaaaatttagaccagatacattaatttttgttgac 3549642  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 14825604 - 14825555
Alignment:
Q  3 taagaaaaatttgattcaacaaaagtatatgtatttggttaaaaaattggac 54  Q
    ||||||| |||||| |||||||||  | ||||||||||||||||||||||||    
T  14825604 taagaaagatttgagtcaacaaaa--acatgtatttggttaaaaaattggac 14825555  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 41594735 - 41594688
Alignment:
Q  31 atgtatttggttaaaaaattggaccatatacatcaatttttgttgacc 78  Q
    |||||| ||||| |||| |||||||||||||||||| |||||||||||    
T  41594735 atgtatctggttcaaaatttggaccatatacatcaacttttgttgacc 41594688  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 21636144 - 21636217
Alignment:
Q  3 taagaaaaatttgattcaacaaaagtatatgtatttggttaaaaaattggaccatatacatcaatttttgttga 76  Q
    |||||||||||||| || | ||||||  ||||||  ||||||||||||| | || |||||| ||||||||||||    
T  21636144 taagaaaaatttgagtcgataaaagttgatgtatcaggttaaaaaattgaagcaaatacattaatttttgttga 21636217  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 44900174 - 44900113
Alignment:
Q  18 tcaacaaaagtatatgtatttggttaaaaaattggaccatatacatcaatttttgttgacca 79  Q
    |||||||||||  | |||| |||||||| |||||||||| ||| ||||| ||||||||||||    
T  44900174 tcaacaaaagttgacgtatctggttaaacaattggaccagatatatcaacttttgttgacca 44900113  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 9876744 - 9876700
Alignment:
Q  7 aaaaatttgattcaacaaaagtatatgtatttggttaaaaaattg 51  Q
    |||||||||  ||||||||| | ||||||||||||||||||||||    
T  9876744 aaaaatttgggtcaacaaaaatttatgtatttggttaaaaaattg 9876700  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 35664004 - 35663952
Alignment:
Q  22 caaaagtatatgtatttggttaaaaaattggaccatatacatcaatttttgtt 74  Q
    |||||||  |||||| ||||| |||| |||||||| |||||||||||||||||    
T  35664004 caaaagttgatgtatctggttcaaaatttggaccagatacatcaatttttgtt 35663952  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 96
Target Start/End: Original strand, 28999124 - 28999162
Alignment:
Q  58 atacatcaatttttgttgaccaagctgtcttttataaat 96  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  28999124 atacatcaatttttgttgaccaaactttcttttataaat 28999162  T

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