View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11422_low_28 (Length: 216)

Name: NF11422_low_28
Description: NF11422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11422_low_28
NF11422_low_28
[»] chr4 (2 HSPs)
chr4 (1-200)||(5213312-5213508)
chr4 (135-167)||(2388912-2388944)
[»] chr1 (2 HSPs)
chr1 (108-200)||(9924080-9924172)
chr1 (103-159)||(10006354-10006410)
[»] chr2 (2 HSPs)
chr2 (135-200)||(35349816-35349881)
chr2 (139-200)||(19879830-19879891)
[»] chr3 (1 HSPs)
chr3 (135-174)||(4609220-4609259)


Alignment Details
Target: chr4 (Bit Score: 146; Significance: 4e-77; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 5213508 - 5213312
Alignment:
Q  1 taaaagttaaaatcagttagaaagctatgtatatttattgtaataatttattcttcccagtattccctgaagcaattatgatgaaatcatgctatgattt 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||| ||||    
T  5213508 taaaagttaaaataagttagaaagctatgtatatttattgtaataatttattcttcccagtattccctgaagcaattatga---aatcatgctattattt 5213412  T
Q  101 tgtcgagtttcctgcggcttttcaagcggaatcaaatccgcaggaatacctgaggattttgatgcggataacgttattcataccaaatttcctgtgaatc 200  Q
    |||| ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |||||    
T  5213411 tgtccagtttcctgcggcttttcatgcggtaacaaatccgcaggaatacctgaggattttgctgcggataacgttagtcatatcaaatttcctgcgaatc 5213312  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 2388944 - 2388912
Alignment:
Q  135 aatccgcaggaatacctgaggattttgatgcgg 167  Q
    ||||||||||||||||||||||||||| |||||    
T  2388944 aatccgcaggaatacctgaggattttgctgcgg 2388912  T

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Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 108 - 200
Target Start/End: Complemental strand, 9924172 - 9924080
Alignment:
Q  108 tttcctgcggcttttcaagcggaatcaaatccgcaggaatacctgaggattttgatgcggataacgttattcataccaaatttcctgtgaatc 200  Q
    |||||||||| ||| || ||||||   | ||||||||||||||||||||||||| |||||||||| ||| ||||||||| ||||||| |||||    
T  9924172 tttcctgcggatttacatgcggaagatagtccgcaggaatacctgaggattttgctgcggataacattagtcataccaagtttcctgcgaatc 9924080  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 10006410 - 10006354
Alignment:
Q  103 tcgagtttcctgcggcttttcaagcggaatcaaatccgcaggaatacctgaggattt 159  Q
    |||||||||||| || |||||| ||||||   |||||| ||||||||||||||||||    
T  10006410 tcgagtttcctgtggattttcatgcggaaaataatccgtaggaatacctgaggattt 10006354  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 35349881 - 35349816
Alignment:
Q  135 aatccgcaggaatacctgaggattttgatgcggataacgttattcataccaaatttcctgtgaatc 200  Q
    ||||| ||||||||||||||||||||| ||||||||| |||| |||||| || | ||||| |||||    
T  35349881 aatccacaggaatacctgaggattttgctgcggataatgttagtcatacgaagtatcctgcgaatc 35349816  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 19879830 - 19879891
Alignment:
Q  139 cgcaggaatacctgaggattttgatgcggataacgttattcataccaaatttcctgtgaatc 200  Q
    |||| |||||||||||||||||| ||||||||||| || || ||| || ||||||| |||||    
T  19879830 cgcaagaatacctgaggattttgctgcggataacgatagtcttacgaagtttcctgcgaatc 19879891  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 174
Target Start/End: Complemental strand, 4609259 - 4609220
Alignment:
Q  135 aatccgcaggaatacctgaggattttgatgcggataacgt 174  Q
    |||||||||||||| |||||||||||| ||||||||||||    
T  4609259 aatccgcaggaatagctgaggattttgctgcggataacgt 4609220  T

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