View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11422_low_5 (Length: 574)
Name: NF11422_low_5
Description: NF11422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11422_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 491; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 2 - 528
Target Start/End: Original strand, 21182668 - 21183194
Alignment:
| Q |
2 |
tgttatcccaatgtcactcttgtgaattattagatgttaaaagaaatgaagtatataatacacaattctatttcagtgagcaaatcaaactacaaaaata |
101 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
21182668 |
tgttatcccaatgtcactctagtgaattattagatattaaaagaaatgaagtatataatacacaattctatttcagtgatcaaatcaaactacaaaaata |
21182767 |
T |
|
| Q |
102 |
ggagaaattaattttcaatattcaagtttgatagttcatcttcatccatcatatgatctgatccattttcagtggccctaacactacaaaactcgcaaga |
201 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
21182768 |
gaagaaattaattttcaatattcaagtttgatagttcatcttcatccatcatatgatctgatccattttcagtggcactaacactacaaaactcgcaaga |
21182867 |
T |
|
| Q |
202 |
aatattgggaggcttcaaatgcaagcattgaccaatccgtttctccagccaagcaagtctactttcaaggttcaaaacaccaatatgcaaaatccgaatg |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21182868 |
aatattgggaggcttcaaatgcaagcattgaccaatccgtttctccagccaagcaagtcttctttcaaggttcaaaacaccaatatgcaaaatccgaatg |
21182967 |
T |
|
| Q |
302 |
tcatcaacatgcgcagctctggcaaaagcctgaagcaaaatgtaataatcagcatgagcaaaataggacagggcacctttatccttctttctgacatagt |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21182968 |
tcatcaacatgcgcagctctggcaaaagcccgaagcaaaatgtaataatcagcatgagcaacataggacagggcacctttatccttctttctgacatagt |
21183067 |
T |
|
| Q |
402 |
gaacataaccaagcttttcctgcttgacactaggtggtatgtaacaaaatctgttttcctccatgtctaatttcaactgtctaatagcttctggcaaact |
501 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21183068 |
gaacataaccaagcttttcctgcttgacactaggtggaatgtaacaaaatctgttttcctccatgtctaatttcaactgtctaatagcttctggcaaact |
21183167 |
T |
|
| Q |
502 |
tcctgagggattatcatcactcaaaca |
528 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
21183168 |
tcctgagggattatcatcactcaaaca |
21183194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 2 - 528
Target Start/End: Original strand, 27116287 - 27116815
Alignment:
| Q |
2 |
tgttatcccaatgtcactcttgtgaattattagatgttaaaagaaatgaagtatataatacacaattctatttcagtgagcaaatcaaactacaaaaata |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27116287 |
tgttatcccaatgtcactcttgtgaattattagatattaaaagaaatgaagtatataatacacaattctatttcagtgatcaaatcaaactacaaaaata |
27116386 |
T |
|
| Q |
102 |
-ggagaaattaattttc-aatattcaagtttgatagttcatcttcatccatcatatgatctgatccattttcagtggccctaacactacaaaactcgcaa |
199 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27116387 |
aggagaaattaattttctaatattcaagtttgatagttcatcttcatccatcatatgatctgatccattttcagtggctctaacactacaaaactcgcaa |
27116486 |
T |
|
| Q |
200 |
gaaatattgggaggcttcaaatgcaagcattgaccaatccgtttctccagccaagcaagtctactttcaaggttcaaaacaccaatatgcaaaatccgaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27116487 |
gaaatattgggaggcttcaaatgcaagcattgaccaatccgtttctccagccaagcaagtcttctttcaaggttcaaaacaccaatatgcaaaatccgaa |
27116586 |
T |
|
| Q |
300 |
tgtcatcaacatgcgcagctctggcaaaagcctgaagcaaaatgtaataatcagcatgagcaaaataggacagggcacctttatccttctttctgacata |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27116587 |
tgtcatcaacatgcgcagctctggcaaaagcccgaagcaaaatgtaataatcagcatgagcaacataggacagggcacctttatccttctttctgacata |
27116686 |
T |
|
| Q |
400 |
gtgaacataaccaagcttttcctgcttgacactaggtggtatgtaacaaaatctgttttcctccatgtctaatttcaactgtctaatagcttctggcaaa |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27116687 |
gtgaacataaccaagcttttcctgcttgacactaggtggtatgtaacaaaatctgttttcctccatgtctaatttcaactgtctaatagcttctggcaaa |
27116786 |
T |
|
| Q |
500 |
cttcctgagggattatcatcactcaaaca |
528 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
27116787 |
cttcctgagggattatcatcactcaaaca |
27116815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 4e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 180 - 476
Target Start/End: Complemental strand, 28488322 - 28488029
Alignment:
| Q |
180 |
taacactacaaaactcgcaagaaatattgggaggcttcaaatgcaagcattgaccaatccgtttctccagccaagcaagtctactttcaaggttcaaaac |
279 |
Q |
| |
|
||||||||||||||| ||||||||| ||| ||| |||||||||||||||||| ||| |||||||||||||||||||||||| | ||||| ||||||| |
|
|
| T |
28488322 |
taacactacaaaactgacaagaaatactggaaggtttcaaatgcaagcattgatcaacccgtttctccagccaagcaagtcttttctcaagtctcaaaac |
28488223 |
T |
|
| Q |
280 |
accaatatgcaaaatccgaatgtcatcaacatgcgcagctctggcaaaagcctgaagcaaaatgtaataatcagcatgagcaaaataggacagggcacct |
379 |
Q |
| |
|
|||||| |||||||||| ||||||| || || ||| ||||||| ||| | |||||||||||||||||||||||||||||| || | || ||||||| |
|
|
| T |
28488222 |
accaatttgcaaaatcctaatgtca---acttgtgcaattctggcacaagtccgaagcaaaatgtaataatcagcatgagcaacgtaagtcatggcacct |
28488126 |
T |
|
| Q |
380 |
ttatccttctttctgacatagtgaacataaccaagcttttcctgcttgacactaggtggtatgtaacaaaatctgttttcctccatgtctaatttca |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| || | | ||||||| | |||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
28488125 |
ttatccttctttctgacatagtgaacataatcaaggttcttcggcttgacgcgaggtggtacataacaaaataggttttcctccatgtctaatttca |
28488029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University