View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11422_low_6 (Length: 569)
Name: NF11422_low_6
Description: NF11422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11422_low_6 |
 | |
|
| [»] scaffold0640 (2 HSPs) |
| | |
|
| [»] scaffold0271 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 509; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 18 - 558
Target Start/End: Original strand, 1041858 - 1042398
Alignment:
| Q |
18 |
gttttcaaaggacatcaattttaggataatgtaagctagcatgatttaattggttgataccatgtctcaaatgttatggaacatttcttcttctgataaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1041858 |
gttttcaaaggacatcaattttaggataatgtaagctagcatgatttaattggttgataccttgtctcaaatgttatggaacatttcttcttctgataaa |
1041957 |
T |
|
| Q |
118 |
gtatctgagaagttggaagaacttaaagggcatcgtggggatgaaatggaagcaatttttcaacaaaaaatgaatgagcttacttttacagctcaagaac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1041958 |
gtatctgagaagttggaagaacttaaagggcgtcgtggggatgaaatggaagcaagttttcaacaaaaaatgaatgagcttacttttacagctcaagaac |
1042057 |
T |
|
| Q |
218 |
acggatggaaaggaaatgaggcacaataagaatttcaggatttcgataagggtgaaacgaataagaaaaactggtggaagcgctttgtaaaaatcaggaa |
317 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1042058 |
acggacggaaaggaaatgaggcacaagaagaatttcaggatttcgataagggtgaaacgaataagaaaaactggtggaagcgctttgtaaaaatcaggaa |
1042157 |
T |
|
| Q |
318 |
agatatgaagttcgcgagattgttgtaataatagaataagatgcttttcaatattgcaatgtattttcctatccgataaattgtgagctttgaccatttt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1042158 |
agatatgaagttcgcgagattgttgtaataatagaataagatgcttttcaatattgcaatgtattttcctatccgataaactgtgagctttgaccatttt |
1042257 |
T |
|
| Q |
418 |
ctgttgaatcggaggggtgtattttgtttgaaagtcaaaccagtgttgattgttggactgctgcaggtttgatttcaacccttcaaccgcgaatgtctcg |
517 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1042258 |
ctgttgaatcggaggggcgtattttgtttgaaagtcaaaccagtgttgattgttggactgctgcaggtttgatttcaacccttcaaccgcgaatgtctcg |
1042357 |
T |
|
| Q |
518 |
gtttcatacagtgggagcagttctcctggatgtctgtgctc |
558 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1042358 |
gtttcatacggtgggagcagttctcctggatgtctgtgctc |
1042398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 18 - 558
Target Start/End: Original strand, 41192923 - 41193463
Alignment:
| Q |
18 |
gttttcaaaggacatcaattttaggataatgtaagctagcatgatttaattggttgataccatgtctcaaatgttatggaacatttcttcttctgataaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41192923 |
gttttcaaaggacatcaattttaggataatgtaagctagcatgatttaattggttgataccttgtctcaaatgttatggaacatttcttcttctgataaa |
41193022 |
T |
|
| Q |
118 |
gtatctgagaagttggaagaacttaaagggcatcgtggggatgaaatggaagcaatttttcaacaaaaaatgaatgagcttacttttacagctcaagaac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41193023 |
gtatctgagaagttggaagaacttaaagggcgtcgtggggatgaaatggaagcaagttttcaacaaaaaatgaatgagcttacttttacagctcaagaac |
41193122 |
T |
|
| Q |
218 |
acggatggaaaggaaatgaggcacaataagaatttcaggatttcgataagggtgaaacgaataagaaaaactggtggaagcgctttgtaaaaatcaggaa |
317 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41193123 |
acggacggaaaggaaatgaggcacaagaagaatttcaggatttcgataagggtgaaacgaataagaaaaactggtggaagcgctttgtaaaaatcaggaa |
41193222 |
T |
|
| Q |
318 |
agatatgaagttcgcgagattgttgtaataatagaataagatgcttttcaatattgcaatgtattttcctatccgataaattgtgagctttgaccatttt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41193223 |
agatatgaagttcgcgagattgttgtaataatagaataagatgcttttcaatattgcaatgtattttcctatccgataaactgtgagctttgaccatttt |
41193322 |
T |
|
| Q |
418 |
ctgttgaatcggaggggtgtattttgtttgaaagtcaaaccagtgttgattgttggactgctgcaggtttgatttcaacccttcaaccgcgaatgtctcg |
517 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41193323 |
ctgttgaatcggaggggcgtattttgtttgaaagtcaaaccagtgttgattgttggattggtgcaggtttgatttcaacccttcaaccgcgaatatctcg |
41193422 |
T |
|
| Q |
518 |
gtttcatacagtgggagcagttctcctggatgtctgtgctc |
558 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41193423 |
gtttcatacggtgggagcagttctcctggatgtctgtgctc |
41193463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 19 - 558
Target Start/End: Original strand, 41200180 - 41200719
Alignment:
| Q |
19 |
ttttcaaaggacatcaattttaggataatgtaagctagcatgatttaattggttgataccatgtctcaaatgttatggaacatttcttcttctgataaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41200180 |
ttttcaaaggacatcaattttaggataatgtaagctagcatgatttaattggttgataccttgtctcaaatgttatggaacatttcttcttctgataaag |
41200279 |
T |
|
| Q |
119 |
tatctgagaagttggaagaacttaaagggcatcgtggggatgaaatggaagcaatttttcaacaaaaaatgaatgagcttacttttacagctcaagaaca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41200280 |
tatctgagaagttggaagaacttaaagggcgtcgtggggatgaaatggaagcaagttttcaacaaaaaatgaatgagcttacttttacagctcaagaaca |
41200379 |
T |
|
| Q |
219 |
cggatggaaaggaaatgaggcacaataagaatttcaggatttcgataagggtgaaacgaataagaaaaactggtggaagcgctttgtaaaaatcaggaaa |
318 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41200380 |
cggacggaaaggaaatgaggcacaagaagaatttcaggatttcgataagggtgaaacgaataagaaaaactggtggaagcgctttgtaaaaatcaggaaa |
41200479 |
T |
|
| Q |
319 |
gatatgaagttcgcgagattgttgtaataatagaataagatgcttttcaatattgcaatgtattttcctatccgataaattgtgagctttgaccattttc |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41200480 |
gatatgaagttcgcgagattgttgtaataatagaataagatgcttttcaatattgcaatgtattttcctatccgataaactgtgagctttgaccattttc |
41200579 |
T |
|
| Q |
419 |
tgttgaatcggaggggtgtattttgtttgaaagtcaaaccagtgttgattgttggactgctgcaggtttgatttcaacccttcaaccgcgaatgtctcgg |
518 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41200580 |
tgttgaatcggaggggcgtattttgtttgaaagtcaaaccagtgttgattgttggattggtgcaggtttgatttcaacccttcaaccgcgaatatctcgg |
41200679 |
T |
|
| Q |
519 |
tttcatacagtgggagcagttctcctggatgtctgtgctc |
558 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41200680 |
tttcatacggtgggagcagttctcctggatgtctgtgctc |
41200719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 336 - 552
Target Start/End: Original strand, 41408355 - 41408571
Alignment:
| Q |
336 |
attgttgtaataatagaataagatgcttttcaatattgcaatgtattttcctatccgataaattgtgagctttgaccattttctgttgaatcggaggggt |
435 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||| || |||||||| |||||||||||||||| |||||| |
|
|
| T |
41408355 |
attgttgtaataatgcaataagatgctcttcaatattgcaatgtattttcctgtccgataaactgcgagctttgcgcattttctgttgaatccgaggggc |
41408454 |
T |
|
| Q |
436 |
gtattttgtttgaaagtcaaaccagtgttgattgttggactgctgcaggtttgatttcaacccttcaaccgcgaatgtctcggtttcatacagtgggagc |
535 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||| || ||||||||||||||||| |||||| | |
|
|
| T |
41408455 |
atattttgtttgaaagtcaaaccgctgttgattgttggactactgcaggtttgatttcatcccttcaacagcaaatgtctcggtttcatatggtgggaac |
41408554 |
T |
|
| Q |
536 |
agttctcctggatgtct |
552 |
Q |
| |
|
| |||| ||||||||| |
|
|
| T |
41408555 |
aactctcgtggatgtct |
41408571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 41407612 - 41407727
Alignment:
| Q |
18 |
gttttcaaaggacatcaattttaggataatgtaagctagcatgatttaattggttgataccatgtctcaaatgttatggaacatttcttcttctgataaa |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41407612 |
gttttcaaaggacatccattttaggataatgtaagctagcatgatttagttggttgatacctagtctcaaatgttatggaacatttcttcttctgataaa |
41407711 |
T |
|
| Q |
118 |
gtatctgagaagttgg |
133 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
41407712 |
gtatctgagaagttgg |
41407727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 18 - 558
Target Start/End: Original strand, 33323449 - 33323989
Alignment:
| Q |
18 |
gttttcaaaggacatcaattttaggataatgtaagctagcatgatttaattggttgataccatgtctcaaatgttatggaacatttcttcttctgataaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33323449 |
gttttcaaaggacatcaattttaggataatgtaagctagcatgatttaattggttgataccttgtctcaaatgttatggaacatttcttcttctgataaa |
33323548 |
T |
|
| Q |
118 |
gtatctgagaagttggaagaacttaaagggcatcgtggggatgaaatggaagcaatttttcaacaaaaaatgaatgagcttacttttacagctcaagaac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33323549 |
gtatctgagaagttggaagaacttaaagggcgtcgtggggatgaaatggaagcaagttttcaacaaaaaatgaatgagcttacttttacagctcaagaac |
33323648 |
T |
|
| Q |
218 |
acggatggaaaggaaatgaggcacaataagaatttcaggatttcgataagggtgaaacgaataagaaaaactggtggaagcgctttgtaaaaatcaggaa |
317 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33323649 |
acggacggaaaggaaatgaggcacaagaagaatttcaggatttcgataagggtgaaacgaataagaaaaactggtggaagcgctttgtaaaaatcaggaa |
33323748 |
T |
|
| Q |
318 |
agatatgaagttcgcgagattgttgtaataatagaataagatgcttttcaatattgcaatgtattttcctatccgataaattgtgagctttgaccatttt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33323749 |
agatatgaagttcgcgagattgttgtaataatagaataagatgcttttcaatattgcaatgtattttcctatccgataaactgtgagctttgaccatttt |
33323848 |
T |
|
| Q |
418 |
ctgttgaatcggaggggtgtattttgtttgaaagtcaaaccagtgttgattgttggactgctgcaggtttgatttcaacccttcaaccgcgaatgtctcg |
517 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33323849 |
ctgttgaatcggaggggcgtattttgtttgaaagtcaaaccagtgttgattgttggaatgatgcaggtttgatttcaacccttcaaccgcgaatatctcg |
33323948 |
T |
|
| Q |
518 |
gtttcatacagtgggagcagttctcctggatgtctgtgctc |
558 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
33323949 |
gtttcatacggtgggagcagttctcctggatgtctgtgctc |
33323989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 140; Significance: 5e-73; HSPs: 2)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 316 - 554
Target Start/End: Complemental strand, 2632 - 2394
Alignment:
| Q |
316 |
aaagatatgaagttcgc-gagattgttgtaataatagaataagatgcttttcaatattgcaatgtattttcctatccgataaattgtgagctttgaccat |
414 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||| ||||||||| ||||||||||| ||| |
|
|
| T |
2632 |
aaagatatgaagttcaccgagattgttgtaataatgcaataagatgctcttcaaaattgcaatgtattttcctgtccgataaactgtgagctttgcgcat |
2533 |
T |
|
| Q |
415 |
tttctgttgaatcggaggggtgtattttgtttgaaagtcaaaccagtgttgattgttggactgctgcaggtttgatttcaacccttcaaccgcgaatgtc |
514 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| | |||||| |
|
|
| T |
2532 |
tttctgttgaatccaaggggcatattttgtttgaaagtcaaaccactgttgattgttggactactgcaggtttgatttcaacccttcaacatc-aatgtc |
2434 |
T |
|
| Q |
515 |
tcggtttcatacagtgggagcagttctcctggatgtctgt |
554 |
Q |
| |
|
||| |||||||| |||||| |||||||| ||||||||||| |
|
|
| T |
2433 |
tcgatttcatacggtgggaacagttctcgtggatgtctgt |
2394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 3330 - 3216
Alignment:
| Q |
18 |
gttttcaaaggacatcaattttaggataatgtaagctagcatgatttaattggttgataccatgtctcaaatgttatggaacatttcttcttctgataaa |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3330 |
gttttcaaaggacatccattttaggataatgtaagctagcatgatttagttggttgatacctagtctcaaatgttatggaacatttcttcttctgataaa |
3231 |
T |
|
| Q |
118 |
gtatctgagaagttg |
132 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
3230 |
gtatctgagaagttg |
3216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 125; Significance: 4e-64; HSPs: 2)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 336 - 552
Target Start/End: Complemental strand, 23100 - 22884
Alignment:
| Q |
336 |
attgttgtaataatagaataagatgcttttcaatattgcaatgtattttcctatccgataaattgtgagctttgaccattttctgttgaatcggaggggt |
435 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||| || |||||||| |||||||||||||||| |||||| |
|
|
| T |
23100 |
attgttgtaataatgcaataagatgctcttcaatattgcaatgtattttcctgtccgataaactgcgagctttgcgcattttctgttgaatccgaggggc |
23001 |
T |
|
| Q |
436 |
gtattttgtttgaaagtcaaaccagtgttgattgttggactgctgcaggtttgatttcaacccttcaaccgcgaatgtctcggtttcatacagtgggagc |
535 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||| || ||||||||||||||||| |||||| | |
|
|
| T |
23000 |
atattttgtttgaaagtcaaaccgctgttgattgttggactactgcaggtttgatttcatcccttcaacagcaaatgtctcggtttcatatggtgggaac |
22901 |
T |
|
| Q |
536 |
agttctcctggatgtct |
552 |
Q |
| |
|
| |||| ||||||||| |
|
|
| T |
22900 |
aactctcgtggatgtct |
22884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 23886 - 23772
Alignment:
| Q |
18 |
gttttcaaaggacatcaattttaggataatgtaagctagcatgatttaattggttgataccatgtctcaaatgttatggaacatttcttcttctgataaa |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23886 |
gttttcaaaggacatccattttaggataatgtaagctagcatgatttagttggttgatacctagtctcaaatgttatggaacatttcttcttctgataaa |
23787 |
T |
|
| Q |
118 |
gtatctgagaagttg |
132 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
23786 |
gtatctgagaagttg |
23772 |
T |
|
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Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 234 - 319
Target Start/End: Original strand, 38951714 - 38951799
Alignment:
| Q |
234 |
tgaggcacaataagaatttcaggatttcgataagggtgaaacgaataagaaaaactggtggaagcgctttgtaaaaatcaggaaag |
319 |
Q |
| |
|
||||||| || |||||||| |||||||||||| ||| || | |||| ||||||||||| |||||| ||||| || |||||||||| |
|
|
| T |
38951714 |
tgaggcaaaagaagaattttgggatttcgataatggtaaagctaataggaaaaactggttgaagcgttttgtgaacatcaggaaag |
38951799 |
T |
|
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