View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11422_low_8 (Length: 485)
Name: NF11422_low_8
Description: NF11422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11422_low_8 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 58 - 485
Target Start/End: Original strand, 53233033 - 53233439
Alignment:
| Q |
58 |
ggaactttgagttagtacagtgtcagtcagcaacagctatctctcatgaactattatgactgtaaataaagactagtccttctcttcttctgattctatt |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53233033 |
ggaactttgagttagtacagtgtcagtcagcaacagctatctctcatgaactattatgactgtaaataaagactagtccttctcttcttctgattctatt |
53233132 |
T |
|
| Q |
158 |
gcgttgcatgctaagactaataacaccatcactacatcactgtccttccttcaacactttcatcatcatcattcattattattattatatgcacagattc |
257 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
53233133 |
gcgttgcatgctaagactaacaacaccatcactacatcactgtccttccttgaacactttcatcatcatcattc---attattattatatgcacagattc |
53233229 |
T |
|
| Q |
258 |
tcatttctctagctccaccacctgatgcatgagctcattccattccaaatattggcgtttgaaattgacttggctttgcatgtgtttggaatgtgtatcc |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
53233230 |
tcatttctctagctccaccacctgatgcatgagctcattccattccaaatattggcgtttgaaatagacttggctttgcatgtgtttggaatgtgtgtcc |
53233329 |
T |
|
| Q |
358 |
aatccagttatttccatttccataactagtaccattctcataactactactattactatttaaagaaaatattggcgttgcgaatggaattgaactcgtt |
457 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53233330 |
aatccagttatttccatttc------------------cataactactactattactatttaaagaaaatattggcgttgcgaatggaattgaactcgtt |
53233411 |
T |
|
| Q |
458 |
gaagctgacgacgaagatgaagaattgg |
485 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
53233412 |
gaagctgacgacgaagatgaagaattgg |
53233439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University