View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11422_low_9 (Length: 484)
Name: NF11422_low_9
Description: NF11422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11422_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 10 - 468
Target Start/End: Original strand, 53233426 - 53233884
Alignment:
| Q |
10 |
agatgaagaattggaaccactgcttccgttcatattttgttgctgaacaaatatacccgatccactgaaaaatgctgcattgtggggattatcactgttg |
109 |
Q |
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| T |
53233426 |
agatgaagaattggaaccactgcttccgttcatattttgttgctgaacaaatatacctgatccactgaaaaatgctgcattgtggggattatcactgttg |
53233525 |
T |
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| Q |
110 |
gtatttgaaggtgcatgagcagaaaaatccatgttgaatggtgtggtagtagtagtaacagcactaggattattatggaagccgagaatattggaccaat |
209 |
Q |
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| T |
53233526 |
gtatttgaaggtacatgagcagaaaaatccatgttgaatggtatggtagtggtagtaacagcactaggattattatggaagccgagaatattggaccaat |
53233625 |
T |
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| Q |
210 |
aatcggtagaagggtcttgtttaataggtaaggcgaagcttaaagttgttgctgacgaagttgaagatggatgatctatttcgtcggattgaattggttc |
309 |
Q |
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| T |
53233626 |
aatcggtagaagggtcttgtttaataggtaaggcgaagcttaaagttgttgctgacgaagttgaagatggatgatctatttcgtcggattgaattggttc |
53233725 |
T |
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| Q |
310 |
attgattttggtttctgaaacacaatctgtggaatttttattgttcttgtttgataaacctcctatgggaagagaactatttgcaatactctttacgtcg |
409 |
Q |
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| T |
53233726 |
attgattttggtttctgatacacaatctgtggaatttttattgttcttgtttgataaacctcctatgggaagagaacaatttgcaatactctttacgtcg |
53233825 |
T |
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| Q |
410 |
taccgactcatgtcaaaatttgttactgcatttagtcctctaaatttgattgctgcaat |
468 |
Q |
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| T |
53233826 |
taccgactcatgtcaaaatttgttactgcatttagtcctctaaatttgattgctgcaat |
53233884 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 462
Target Start/End: Original strand, 41963775 - 41963833
Alignment:
| Q |
404 |
acgtcgtaccgactcatgtcaaaatttgttactgcatttagtcctctaaatttgattgc |
462 |
Q |
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|||||||| ||| |||||||||| ||||||||||| |||| |||||| ||||||||||| |
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| T |
41963775 |
acgtcgtaacgattcatgtcaaagtttgttactgcgtttaatcctctgaatttgattgc |
41963833 |
T |
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