View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11423_high_2 (Length: 549)
Name: NF11423_high_2
Description: NF11423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11423_high_2 |
 | |
|
| [»] scaffold0014 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 63 - 338
Target Start/End: Complemental strand, 1991109 - 1990834
Alignment:
| Q |
63 |
gcacagtgaaggtgagcttcgcagagaaaagtgtgaaacgcgggagagaaaagtgagaaacgccggatatgaaatgacagagaattgtgaaatttttgta |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1991109 |
gcacagtgaaggtgagcttcgcagagaaaagtgtgaaacgcgggagagaaaagtgagaaacgccggatatgaaatgacagagaattgtgaaatttttgta |
1991010 |
T |
|
| Q |
163 |
ttttaggtgttattttaaatcctttaaattttgcaaaagagaaattcttatcaaaatgctttgaattttaaaaatgacttaaatattttcccaaacaatg |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1991009 |
ttttaggtgttattttaaatcctttaaattttggaaaagagaaattcttatcaaaatgctttgaattttaaaaatgacttaaatattttcccaaacaata |
1990910 |
T |
|
| Q |
263 |
gaatttgggtcaagtcaatttaaattctccaaaaaattacattccctcgttaaaatactttatccaaacacactct |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1990909 |
gaatttgggtcaagtcaatttaaattctccaaaaaattacattccctcattaaaatactttatccaaacacactct |
1990834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 68 - 341
Target Start/End: Original strand, 26439643 - 26439914
Alignment:
| Q |
68 |
gtgaaggtgagcttcgcagagaaaagtgtgaaacgcgggagagaaaagtgagaaacgccggatatgaaatgacagagaattgtgaaatttttgtatttta |
167 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26439643 |
gtgaaggtgagcttcacagagaaaagtgtgaaacgcgggagagaaaagtgagaaacgcgtgat--gaaatgacagagaattgtgaaatttttgtgtttta |
26439740 |
T |
|
| Q |
168 |
ggtgttattttaaatcctttaaattttgcaaaagagaaattcttatcaaaatgctttgaattttaaaaatgacttaaatattttcccaaacaatggaatt |
267 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
26439741 |
ggtgttattttaaatccttcaaattttgcaaaagaaaaattcttatctaaatgccttgaattttaaaaatgacttaaatatttttccaaacaatagaatt |
26439840 |
T |
|
| Q |
268 |
tgggtcaagtcaatttaaattctccaaaaaattacattccctcgttaaaatactttatccaaacacactcttaa |
341 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||| |||||||||| ||| ||||||||||||||| |
|
|
| T |
26439841 |
tgggtcaagtcaatttaaattctctaaaaaattacatttcctcattaaaatactctattcaaacacactcttaa |
26439914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 141 - 338
Target Start/End: Complemental strand, 20357224 - 20357027
Alignment:
| Q |
141 |
agagaattgtgaaatttttgtattttaggtgttattttaaatcctttaaattttgcaaaagagaaattcttatcaaaatgctttgaattttaaaaatgac |
240 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||||||| | ||||||||||||||| ||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
20357224 |
agagaattctgaaattttggtattttaggtgttattttaaatccatcaaattttgcaaaagaaaaattcttatctaaatgccttgaattttaaaaatgag |
20357125 |
T |
|
| Q |
241 |
ttaaatattttcccaaacaatggaatttgggtcaagtcaatttaaattctccaaaaaattacattccctcgttaaaatactttatccaaacacactct |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||| ||||||| || |||||||||||||||| |
|
|
| T |
20357124 |
ttaaatattttcccaaacaatggaatttgggtcaagtcaatttaaatatttcaaaaaattactttccctcattaaaatgctctatccaaacacactct |
20357027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 318
Target Start/End: Complemental strand, 16879057 - 16878981
Alignment:
| Q |
243 |
aaatattttcccaaacaatggaatttgggtcaagtcaatttaaattctccaaaaa-attacattccctcgttaaaat |
318 |
Q |
| |
|
||||||||||||||| | | |||||||| |||||||||| |||| ||||||||| ||| |||| |||| ||||||| |
|
|
| T |
16879057 |
aaatattttcccaaagagtagaatttggtccaagtcaattcaaatactccaaaaagattgcattacctcattaaaat |
16878981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 108 - 340
Target Start/End: Original strand, 11004043 - 11004275
Alignment:
| Q |
108 |
gagaaaagtgagaaacgccggatatgaaatgacagagaattgtgaaatttttgtattttaggtgttattttaaatcctttaaattttgcaaaagagaaat |
207 |
Q |
| |
|
|||||||||| ||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11004043 |
gagaaaagtgtgaaacgcgtgtgatgaaatgacagagaattgtgaaatgtttgtattttaggtgttattttaaatccttcaaattttgcaaaagagaaat |
11004142 |
T |
|
| Q |
208 |
tcttatcaaaatgctttgaattttaaaaatgacttaaatattttcccaaacaatggaatttgggtcaagtcaatttaaattctccaaaaaattacattcc |
307 |
Q |
| |
|
||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11004143 |
tcttatctaaatgccttgaatttaaaaaatgacttaaatattttcccaaacaatggaatttgggtcaagtcaatttaaattctccaaaaaattacattcc |
11004242 |
T |
|
| Q |
308 |
ctcgttaaaatactttatccaaacacactctta |
340 |
Q |
| |
|
||| |||||||||| |||||||||||||||||| |
|
|
| T |
11004243 |
ctcattaaaatactctatccaaacacactctta |
11004275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 131 - 338
Target Start/End: Complemental strand, 3297354 - 3297147
Alignment:
| Q |
131 |
atgaaatgacagagaattgtgaaatttttgtattttaggtgttattttaaatcctttaaattttgcaaaagagaaattcttatcaaaatgctttgaattt |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
3297354 |
atgaaatgacagagaattgtgaaatttttgtattttaggtgttattataaatccttcaaattttgcaaaagagaaattcttatctaaatgccttgaattt |
3297255 |
T |
|
| Q |
231 |
taaaaatgacttaaatattttcccaaacaatggaatttgggtcaagtcaatttaaattctccaaaaaattacattccctcgttaaaatactttatccaaa |
330 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
3297254 |
taaaaatgacttaaatattctcccaaacaatggaatttgggtcaagtcaatttaaattctccaaaaaattacattccctcattaaaatactctatccaaa |
3297155 |
T |
|
| Q |
331 |
cacactct |
338 |
Q |
| |
|
|||||||| |
|
|
| T |
3297154 |
cacactct |
3297147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 158 - 338
Target Start/End: Complemental strand, 43773095 - 43772916
Alignment:
| Q |
158 |
ttgtattttaggtgttattttaaatcctttaaattttgcaaaagagaaattcttatcaaaatgctttgaattttaaaaatgacttaaatattttcccaaa |
257 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||| |||||| ||||||||||| |||| |||||||| |||||||| ||||||||||||||||| |
|
|
| T |
43773095 |
ttgtaatttaggtgttattttaaatgctttaaattttggaaaagaaaaattcttatctaaatatcttgaatttcaaaaatgaattaaatattttcccaaa |
43772996 |
T |
|
| Q |
258 |
caatggaatttgggtcaagtcaatttaaattctccaaaaaattacattccctcgttaaaatactttatccaaacacactct |
338 |
Q |
| |
|
|| | |||||| | ||| |||||| |||| |||||||| |||||||||||| |||||| | | |||||||||||||||| |
|
|
| T |
43772995 |
cagt-gaatttagtccaaatcaattcaaatactccaaaagattacattccctagttaaagttccctatccaaacacactct |
43772916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 181; Significance: 2e-97; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 337 - 533
Target Start/End: Original strand, 6668454 - 6668650
Alignment:
| Q |
337 |
cttaattttaatttcaacttttaggctattaatcaatgaagaacaagcttgaatgttctgaaggtggtgtcatgcgataactaacaggtgtagataatgt |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6668454 |
cttaattttaatttcaacttttaggctattaaataatgaagaacaagcttgaatgctctgaaggtggtgtcatgcgataactaacaggtgtagataatgt |
6668553 |
T |
|
| Q |
437 |
atgtatctctctgcatcagtttgttgttattttctccataattatcctcttccatgatttacatattttcgttacagctattgttataattcttttt |
533 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6668554 |
atatatctctctgcatcagtttgttgttattttctccataattatcctcttccatgatttacatattttcgttacagctattgttataattcttttt |
6668650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 134 - 337
Target Start/End: Complemental strand, 1499803 - 1499600
Alignment:
| Q |
134 |
aaatgacagagaattgtgaaatttttgtattttaggtgttattttaaatcctttaaattttgcaaaagagaaattcttatcaaaatgctttgaattttaa |
233 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||| |||||| |||||||||| |
|
|
| T |
1499803 |
aaatgacagagaattttgaaatttttgtaatttaggtgttattttaaatccttcaaattatgcaagagagaaattcttatctaaatgccttgaattttag |
1499704 |
T |
|
| Q |
234 |
aaatgacttaaatattttcccaaacaatggaatttgggtcaagtcaatttaaattctccaaaaaattacattccctcgttaaaatactttatccaaacac |
333 |
Q |
| |
|
|||||||||||||||||| |||||| || ||||||| ||||||||||||||| ||||||||| | |||||||| ||| || | || ||||||||||| |
|
|
| T |
1499703 |
gaatgacttaaatattttctcaaacagtgaaatttggtccaagtcaatttaaatagtccaaaaaaatgcattccctagttcaatttctctatccaaacac |
1499604 |
T |
|
| Q |
334 |
actc |
337 |
Q |
| |
|
|||| |
|
|
| T |
1499603 |
actc |
1499600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 134 - 318
Target Start/End: Original strand, 1500653 - 1500837
Alignment:
| Q |
134 |
aaatgacagagaattgtgaaatttttgtattttaggtgttattttaaatcctttaaattttgcaaaagagaaattcttatcaaaatgctttgaattttaa |
233 |
Q |
| |
|
|||||||| |||||| |||| |||||||| ||||||| ||||||||||||| | |||||||||| ||| ||||||||||| |||||| || |||||||| |
|
|
| T |
1500653 |
aaatgacaaagaattttgaactttttgtaatttaggtattattttaaatccctctaattttgcaagagaaaaattcttatctaaatgccttaaattttaa |
1500752 |
T |
|
| Q |
234 |
aaatgacttaaatattttcccaaacaatggaatttgggtcaagtcaatttaaattctccaaaaaattacattccctcgttaaaat |
318 |
Q |
| |
|
|||||||||||||| |||| |||||| || ||||||| |||||||||||||||| || | ||||||||||||| ||| ||||||| |
|
|
| T |
1500753 |
aaatgacttaaatactttctcaaacagtgaaatttggttcaagtcaatttaaatacttcgaaaaattacattctctcattaaaat |
1500837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 160; Significance: 5e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 141 - 340
Target Start/End: Original strand, 9022189 - 9022388
Alignment:
| Q |
141 |
agagaattgtgaaatttttgtattttaggtgttattttaaatcctttaaattttgcaaaagagaaattcttatcaaaatgctttgaattttaaaaatgac |
240 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
9022189 |
agagaattctgaaattttggtattttaggtgttattttaaatccatcaaattttgcaaaagagaaattcttatctaaatgccttgaattttaaaaatgac |
9022288 |
T |
|
| Q |
241 |
ttaaatattttcccaaacaatggaatttgggtcaagtcaatttaaattctccaaaaaattacattccctcgttaaaatactttatccaaacacactctta |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
9022289 |
ttaaatattttcccaaacaatggaatttgggtcaagtcaatttaaatactccaaaaaattactttccctcattaaaatgctttatccaaacacactctta |
9022388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 145; Significance: 5e-76; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 134 - 310
Target Start/End: Original strand, 11193 - 11369
Alignment:
| Q |
134 |
aaatgacagagaattgtgaaatttttgtattttaggtgttattttaaatcctttaaattttgcaaaagagaaattcttatcaaaatgctttgaattttaa |
233 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||| |||||| ||||||||||| |
|
|
| T |
11193 |
aaatgacaaagaattgtgaaatttttgtattttaggtgttattttaaatccatcaaattttgcaaaagaaaaattcttatctaaatgccttgaattttaa |
11292 |
T |
|
| Q |
234 |
aaatgacttaaatattttcccaaacaatggaatttgggtcaagtcaatttaaattctccaaaaaattacattccctc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
11293 |
aaatgacttaaatattttcccaaacaatggaatttgggtcaagtcaatttaaatactccaaaaaattactttccctc |
11369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 3e-71; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 134 - 338
Target Start/End: Complemental strand, 44609269 - 44609066
Alignment:
| Q |
134 |
aaatgacagagaattgtgaaatttttgtattttaggtgttattttaaatcctttaaattttgcaaaagagaaattcttatcaaaatgctttgaattttaa |
233 |
Q |
| |
|
||||||||||||||| | |||||| ||| ||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
44609269 |
aaatgacagagaattttacaattttagtaatttaggtgttattttaaatccctcaaattttgcaaaagagaaattcttatctaaatgccttgaattttaa |
44609170 |
T |
|
| Q |
234 |
aaatgacttaaatattttcccaaacaatggaatttgggtcaagtcaatttaaattctccaaaaaattacattccctcgttaaaatactttatccaaacac |
333 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||| ||||||| |||||| |||||||||||||| |
|
|
| T |
44609169 |
aaatgacttaaatattttcccaaacaatagaatttgggtcaagtcaatttaaatactcc-aaaaattactttccctcactaaaatgctttatccaaacac |
44609071 |
T |
|
| Q |
334 |
actct |
338 |
Q |
| |
|
||||| |
|
|
| T |
44609070 |
actct |
44609066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 128 - 329
Target Start/End: Complemental strand, 13145330 - 13145131
Alignment:
| Q |
128 |
gatatgaaatgacagagaattgtgaaatttttgtattttaggtgttattttaaatcctttaaattttgcaaaagagaaattcttatcaaaatgctttgaa |
227 |
Q |
| |
|
|||||||||||| |||||||| | || |||| || ||||||||||||||||| ||| ||||||||||| ||||| |||||||| |||| ||||| |
|
|
| T |
13145330 |
gatatgaaatgagagagaattttacaaattttataacttaggtgttattttaaactcttcaaattttgcaagagaga--ttcttatctaaatctgttgaa |
13145233 |
T |
|
| Q |
228 |
ttttaaaaatgacttaaatattttcccaaacaatggaatttgggtcaagtcaatttaaattctccaaaaaattacattccctcgttaaaatactttatcc |
327 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||| ||||||| || ||||| |
|
|
| T |
13145232 |
ttttaaaaatgacttaaatatttttccaaacaatggaatatgggccaagtcaatttaaatactccaaaaaattacattccctcattaaaattctctatcc |
13145133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 203 - 334
Target Start/End: Complemental strand, 26378411 - 26378278
Alignment:
| Q |
203 |
gaaattcttatcaaaatgctttgaattttaaaaa-tgacttaaatattttcccaaacaatggaatttgggtcaagtcaatttaaattctccaaaaa-att |
300 |
Q |
| |
|
|||||||||||| |||||| ||||| |||||||| |||||||||||| |||||||||| ||||||||||| ||| ||||||||||| || |||||| ||| |
|
|
| T |
26378411 |
gaaattcttatctaaatgccttgaagtttaaaaaatgacttaaatatattcccaaacagtggaatttgggccaaatcaatttaaatacttcaaaaatatt |
26378312 |
T |
|
| Q |
301 |
acattccctcgttaaaatactttatccaaacaca |
334 |
Q |
| |
|
||||| |||| ||||||| || |||||||||||| |
|
|
| T |
26378311 |
acatttcctcattaaaattctctatccaaacaca |
26378278 |
T |
|
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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 225 - 336
Target Start/End: Original strand, 8482532 - 8482644
Alignment:
| Q |
225 |
gaattttaaaaatgacttaaatattttcc-caaacaatggaatttgggtcaagtcaatttaaattctccaaaaaattacattccctcgttaaaatacttt |
323 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||| ||| ||||||||||| || |||||||||||||||| | |||||| || | |
|
|
| T |
8482532 |
gaattttaaaaatgacttaaatatttttttcaaaacgtggaatttggttcagatcaatttaaatacttcaaaaaattacattccttaaataaaattctct |
8482631 |
T |
|
| Q |
324 |
atccaaacacact |
336 |
Q |
| |
|
||||||||||||| |
|
|
| T |
8482632 |
atccaaacacact |
8482644 |
T |
|
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