View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11423_high_5 (Length: 434)
Name: NF11423_high_5
Description: NF11423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11423_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 16 - 349
Target Start/End: Complemental strand, 29648702 - 29648369
Alignment:
| Q |
16 |
gttggagtcttgctttttcatttgactctactcacaaaagggtattcctatgcacaagttcaattcctccttggcctactttttctggtaattaagttgt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29648702 |
gttggagtcttgctttttcatttgactctactcacaaaagggtattcctatgcacaagttcaattcctccttggcctactttttctggtaattaagttgt |
29648603 |
T |
|
| Q |
116 |
tgattttgtacattgcatcaacttgattttgtaagtttgatggtataaaaaagttttacacatgcattcaatcgtatctcgtcatgatacaagaaatgta |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29648602 |
tgattttgtacattgcatcaacttgattttgtaagtttgatggtataaaaaagttttacacatgcattcaatcgtatctcgtcatgatacaagaaatgta |
29648503 |
T |
|
| Q |
216 |
aaatcttatttgttgcatgtacaggccttcttactattacttgtatgccccttcaacattatataccggtcaagccgttatcacttcctttgtgtgataa |
315 |
Q |
| |
|
| ||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29648502 |
acatcttatttattgtatgtgcaggccttcttactattacttgtatgccccttcaacattatataccggtcaagccgttatcacttcctttgtgtgataa |
29648403 |
T |
|
| Q |
316 |
ggaacataatttggtcacctctttataaggtacc |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
29648402 |
ggaacataatttggtcacctctttataaggtacc |
29648369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 380 - 427
Target Start/End: Complemental strand, 29648335 - 29648288
Alignment:
| Q |
380 |
agtctaaaatcatgtaatgttttggtcataatctcattgaattctctg |
427 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
29648335 |
agtctaaaatcatgtattgttttggtcataatctcattgaattttctg |
29648288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University