View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11423_low_1 (Length: 589)
Name: NF11423_low_1
Description: NF11423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11423_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 481; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 18 - 518
Target Start/End: Complemental strand, 8775948 - 8775448
Alignment:
| Q |
18 |
atttgaaccactgtgattactagcacaatcaattccactatcatcgggattatatgtaggcaaaaaggctgcgtaatctgcatccgtttcatcactgcca |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8775948 |
atttgaaccactgtgattactagcacaatcaattccactatcatcaggattatatgtaggcaaaaaggctgcgtaatctgcatccgtttcatcactgcca |
8775849 |
T |
|
| Q |
118 |
ctgttgttgccatttgaacctccactgtgattactagaacaatcagttagaatatcaggatcatatgtagtcaaaaaggatcgataatcttcatccgttt |
217 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8775848 |
ctgttgttgccatttgaacctccattgtgattactagaacaatcagttagaatatcaggatcatatgtagtcaaaaaggatcgataatcttcatccgttt |
8775749 |
T |
|
| Q |
218 |
catcatcgtcttcactgatatatccactcaaaaatttcatataatcttcatctgcatcatcatctatagtctgattatttttatcaattaaagcatccgt |
317 |
Q |
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| T |
8775748 |
catcatcgtcttcactggtatatccactcaaaaatttcatataatcctcatctgcatcatcatctatagtctgattatttttatcaattaaagcatccgt |
8775649 |
T |
|
| Q |
318 |
atttccataatcttcatccgtttcatcaacctcttcaccagtatatgtactcaaaaattctgcataatcttcatcagcctcatcatctatagtatgatcg |
417 |
Q |
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| T |
8775648 |
atttccataatcttcatccgtttcatcaacctcttcaccagtatatgtactcaaaaattctgcataatcttcatcagcctcatcatctatagtatgatcg |
8775549 |
T |
|
| Q |
418 |
tttttatcaattaaagcagccgtatttccatgatcttcacccatttcatcatcatcttcaccggtatttgcactcaaattgtttacattatcttcatctg |
517 |
Q |
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| T |
8775548 |
tttttatcaattaaagcagccgtatttccatgatcttcacccatttcatcatcatcttcaccggtatttgcactcaaattgttcacattatcttcatctg |
8775449 |
T |
|
| Q |
518 |
c |
518 |
Q |
| |
|
| |
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| T |
8775448 |
c |
8775448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 201 - 579
Target Start/End: Complemental strand, 8775642 - 8775261
Alignment:
| Q |
201 |
ataatcttcatccgtttcatcatcgtcttcactgatatatccactcaaaaatttcatataatcttcatctgcatcatcatctatagtctgattattttta |
300 |
Q |
| |
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|||||||||||||||||||||| | ||||||| ||||| ||||||||||| |||||||||||| || |||||||||||||| |||| |||||| |
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| T |
8775642 |
ataatcttcatccgtttcatcaacctcttcaccagtatatgtactcaaaaattctgcataatcttcatcagcctcatcatctatagtatgatcgttttta |
8775543 |
T |
|
| Q |
301 |
tcaattaaagcatccgtatttccataatcttcatccgtttcatcaacctcttcaccagtatatgtactcaaaaattctgcataatcttcatcagcctcat |
400 |
Q |
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| T |
8775542 |
tcaattaaagcagccgtatttccatgatcttcacccatttcatcatcatcttcaccggtatttgcactcaaattgttcacattatcttcatctgctgcat |
8775443 |
T |
|
| Q |
401 |
ca---tctatagtatgatcgtttttatcaattaaagcagccgtatttccatgatcttcacccatttcatcatcatcttcaccggtatttgcactcaaatt |
497 |
Q |
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|| ||||| |||||| ||||||||||||||||| ||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
8775442 |
cacactctatcacatgatcatttttatcaattaaagcggccatatttccatgatcttcatccattttatcatcatcttcaccggtatttgcactcaaatt |
8775343 |
T |
|
| Q |
498 |
gtttacattatcttcatctgcatcaagatctatcgtatggtcatttttagcatttaaagcagccatgttttcaccattcatc |
579 |
Q |
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| T |
8775342 |
gtttacattatcttcatctgcatcaagatctatcgtatggtcatttttagcatttaaagcagccatattttcaccattcatc |
8775261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 324 - 561
Target Start/End: Complemental strand, 8775765 - 8775528
Alignment:
| Q |
324 |
ataatcttcatccgtttcatcaacctcttcaccagtatatgtactcaaaaattctgcataatcttcatcagcctcatcatctatagtatgatcgttttta |
423 |
Q |
| |
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| T |
8775765 |
ataatcttcatccgtttcatcatcgtcttcactggtatatccactcaaaaatttcatataatcctcatctgcatcatcatctatagtctgattattttta |
8775666 |
T |
|
| Q |
424 |
tcaattaaagcagccgtatttccatgatcttcacccatttcatcatcatcttcaccggtatttgcactcaaattgtttacattatcttcatctgcatcaa |
523 |
Q |
| |
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| T |
8775665 |
tcaattaaagcatccgtatttccataatcttcatccgtttcatcaacctcttcaccagtatatgtactcaaaaattctgcataatcttcatcagcctcat |
8775566 |
T |
|
| Q |
524 |
gatctatcgtatggtcatttttagcatttaaagcagcc |
561 |
Q |
| |
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| T |
8775565 |
catctatagtatgatcgtttttatcaattaaagcagcc |
8775528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 24 - 198
Target Start/End: Original strand, 2541659 - 2541830
Alignment:
| Q |
24 |
accactgtgattactagcacaatcaattccactatcatcgggattatatgtaggcaaaaaggctgcgtaatctgcatccgtttcatcactgccactgttg |
123 |
Q |
| |
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|||||| |||||||||||||||||| || |||||||| ||||| | | || || | ||| ||| |||||||| ||| ||||||||||| || ||||| |
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| T |
2541659 |
accactatgattactagcacaatcagtttcactatcaa---gattacaagcagccagataggatgcataatctgcgtccatttcatcactgtcattgttg |
2541755 |
T |
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| Q |
124 |
ttgccatttgaacctccactgtgattactagaacaatcagttagaatatcaggatcatatgtagtcaaaaaggat |
198 |
Q |
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|||||||||||||| | ||| |||||||| | |||| ||||| |||||||||||||| |||| |||||||||| |
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| T |
2541756 |
ttgccatttgaaccactactctgattacttgcacaaccagtttcaatatcaggatcatgtgtacacaaaaaggat |
2541830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 2542111 - 2542206
Alignment:
| Q |
38 |
tagcacaatcaattccactatcatcgggattatatgtaggcaaaaaggctgcgtaatctgcatccgtttcatcactgccactgttgttgccatttgaac |
136 |
Q |
| |
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| T |
2542111 |
tagcacaatcagtttcaatatcat---gattataagtagccaaaaaggatgtgtaatctgcatcgatttcatcaatgtcattgttgttgccatttgaac |
2542206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 114
Target Start/End: Original strand, 2541986 - 2542073
Alignment:
| Q |
24 |
accactgtgattactagcacaatcaattccactatcatcgggattatatgtaggcaaaaaggctgcgtaatctgcatccgtttcatcactg |
114 |
Q |
| |
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|||||| |||||||||||||||||| || || |||||| ||||||| |||| |||| ||| ||||||||||| |||| |||||||||| |
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| T |
2541986 |
accactatgattactagcacaatcagtttcaatatcat---gattataagtagccaaataggatgcgtaatctgaatccacttcatcactg |
2542073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 2542213 - 2542271
Alignment:
| Q |
161 |
cagttagaatatcaggatcatatgtagtcaaaaaggatcgataatcttcatccgtttca |
219 |
Q |
| |
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||||| ||||||||||||||| ||||| ||||||||||| ||||||||||| ||||| |
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| T |
2542213 |
cagtttgaatatcaggatcatgtgtaggcaaaaaggatccgcaatcttcatccatttca |
2542271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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