View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11423_low_11 (Length: 314)
Name: NF11423_low_11
Description: NF11423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11423_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 31 - 305
Target Start/End: Original strand, 3030541 - 3030822
Alignment:
| Q |
31 |
tcatcatcaatttgataattgaaaggaagaggtactgacttgaatgccctatagtttccaacattgttcaaatgttcattctccaacctgttcaatttaa |
130 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3030541 |
tcatcatcaatttgataattgaaaggaagaggtaccgacttgaatgccctatagtttccaacattgttcaaatgttcattctccaacctgttcaatttaa |
3030640 |
T |
|
| Q |
131 |
aacatcaagttttgccactaactgaagtaact-------ataacaaactgtaacagaatactacagcagtatgatactgttagaattcgaattttagttt |
223 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3030641 |
aacatcaagttttgccactaactgaagtaactaaaaactataacaaactgtaacagaatactacagcagtatgatactgttagaattcgaattttagttt |
3030740 |
T |
|
| Q |
224 |
tcaaggaaacagataaaattaacacaaaaacacaaatgattgatcgaaaatatattcataagggaattaccagaaacctatg |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3030741 |
tcaaggaaacagataaaattaacacaaaaacacaaatgattgatcgaaattatattcataagggaattaccagaaacctatg |
3030822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 3014828 - 3014944
Alignment:
| Q |
19 |
gagctgtcttcatcatcatcaatttgataattgaaaggaagaggtactgacttgaatgccctatagtttccaacattgttcaaatgttcattctccaacc |
118 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3014828 |
gagctgtcttcatcatcatcaacttgataattgaaaggaagaggtactgacttgaatgccctatagtttccaacattgttcaaatgctcattctccaacc |
3014927 |
T |
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| Q |
119 |
tgttcaatttaaaacat |
135 |
Q |
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||||||| | ||||||| |
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| T |
3014928 |
tgttcaactcaaaacat |
3014944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 2996233 - 2996339
Alignment:
| Q |
19 |
gagctgtcttcatcatcatcaatttgataattgaaaggaagaggtactgacttgaatgccctatagtttccaacattgttcaaatgttcattctccaacc |
118 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
2996233 |
gagctgtcttcatcatcatcaacttgataattgaaaggaagaggtactgacttaaatgccctatagtttccaacattgttgaaatgctcattctccaacc |
2996332 |
T |
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| Q |
119 |
tgttcaa |
125 |
Q |
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||||||| |
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| T |
2996333 |
tgttcaa |
2996339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 11327171 - 11327294
Alignment:
| Q |
18 |
agagctgtcttcatcatcatcaatttgataattgaaaggaagaggtactgacttgaatgccctatagtttccaacattgttcaaatgttcattctccaac |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11327171 |
agagctgtcttcatcatcatcaatttgataattgaaaggaagaggtactgacttgaatgccctatagtttccaacattgttcaaatgctcattctccaac |
11327270 |
T |
|
| Q |
118 |
ctgttcaatttaaaacatcaagtt |
141 |
Q |
| |
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|||||||| | ||||||||||||| |
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| T |
11327271 |
ctgttcaagtcaaaacatcaagtt |
11327294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 141 - 304
Target Start/End: Original strand, 11327702 - 11327861
Alignment:
| Q |
141 |
tttgccactaactgaagtaacta----taacaaactgtaacagaatactacagcagtatgatactgttagaattcgaattttagttttcaaggaaacaga |
236 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||| || ||||||| ||||||||||||||||| |||| || |
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| T |
11327702 |
tttgccactaactgatgtaactaaatataacaaactgtaacagaatactacagcagtttgatattgctagaattggaattttagttttcaagaaaactga |
11327801 |
T |
|
| Q |
237 |
taaaattaacacaaaaacacaaatgattgatcgaaaatatattcataagggaattaccagaaacctat |
304 |
Q |
| |
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||||||||||||||| | ||||||| | |||||||||||||| | |||||||||||||||| |
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| T |
11327802 |
taaaattaacacaaaca--------attgatcaagaatatattcataagcggattaccagaaacctat |
11327861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 20064243 - 20064120
Alignment:
| Q |
18 |
agagctgtcttcatcatcatcaatttgataattgaaaggaagaggtactgacttgaatgccctatagtttccaacattgttcaaatgttcattctccaac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
20064243 |
agagctgtcttcatcatcatcaatttgataattgaaaggaagaggtactgacttgaatgccctatagtttccaacattgttcaaatgctcattctccaac |
20064144 |
T |
|
| Q |
118 |
ctgttcaatttaaaacatcaagtt |
141 |
Q |
| |
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|||||||| | ||||||||||||| |
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| T |
20064143 |
ctgttcaagtcaaaacatcaagtt |
20064120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 141 - 304
Target Start/End: Complemental strand, 20063712 - 20063553
Alignment:
| Q |
141 |
tttgccactaactgaagtaacta----taacaaactgtaacagaatactacagcagtatgatactgttagaattcgaattttagttttcaaggaaacaga |
236 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||| || ||||||| ||||||||||||||||| |||| || |
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| T |
20063712 |
tttgccactaactgatgtaactaaatataacaaactgtaacagaatactacagcagtttgatattgctagaattggaattttagttttcaagaaaactga |
20063613 |
T |
|
| Q |
237 |
taaaattaacacaaaaacacaaatgattgatcgaaaatatattcataagggaattaccagaaacctat |
304 |
Q |
| |
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||||||||||||||| | ||||||| | |||||||||||||| | |||||||||||||||| |
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| T |
20063612 |
taaaattaacacaaaca--------attgatcaagaatatattcataagcggattaccagaaacctat |
20063553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 18545941 - 18545872
Alignment:
| Q |
50 |
tgaaaggaagaggtactgacttgaatgccctatagtttccaacattgttcaaatgttcattctccaacct |
119 |
Q |
| |
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|||||||| |||| |||||||||||||| | |||||||||||||||||||| || |||||||||||||| |
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| T |
18545941 |
tgaaaggatgagggactgacttgaatgcacggtagtttccaacattgttcaagtgctcattctccaacct |
18545872 |
T |
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