View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11423_low_13 (Length: 246)

Name: NF11423_low_13
Description: NF11423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11423_low_13
NF11423_low_13
[»] chr1 (5 HSPs)
chr1 (1-237)||(30475162-30475392)
chr1 (1-183)||(25090162-25090345)
chr1 (103-189)||(32794250-32794336)
chr1 (103-183)||(1073251-1073331)
chr1 (103-143)||(25268763-25268803)
[»] chr8 (2 HSPs)
chr8 (98-167)||(38540267-38540336)
chr8 (104-151)||(44003517-44003562)
[»] chr2 (3 HSPs)
chr2 (38-166)||(20681500-20681628)
chr2 (107-153)||(40489709-40489755)
chr2 (107-153)||(40516210-40516256)
[»] scaffold0728 (2 HSPs)
scaffold0728 (29-167)||(2021-2163)
scaffold0728 (29-167)||(6961-7103)
[»] chr3 (4 HSPs)
chr3 (110-183)||(19924984-19925057)
chr3 (103-183)||(44665467-44665547)
chr3 (108-168)||(16239311-16239371)
chr3 (103-143)||(28230816-28230856)
[»] scaffold0792 (1 HSPs)
scaffold0792 (104-183)||(1587-1666)
[»] chr6 (4 HSPs)
chr6 (21-142)||(14460193-14460314)
chr6 (114-161)||(17186225-17186272)
chr6 (106-143)||(17111567-17111604)
chr6 (103-143)||(15107236-15107276)
[»] chr5 (1 HSPs)
chr5 (102-148)||(23409719-23409765)


Alignment Details
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 30475392 - 30475162
Alignment:
Q  1 catcatagtctgaaacaaaataaaagcattagccagcccc-aagcataaaaataagttctggcagcagttatgaaacttataatgataaacagtcaaatg 99  Q
    |||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||    
T  30475392 catcatagtctgaaacaaaataaa-gcattaggcagcccccaagcataaaaataagttctggcagcagtcataaaatttataatgataaacagtcaaatg 30475294  T
Q  100 tgttttaaaccaccaaaaggaaagaagcttgatattttccaaaacctgataaggtgtgctctcttttgaagagaaaattctagctttcttctgccttcca 199  Q
    |||||||||||||||||| |||||||| |||||||||||||||| ||||        ||||||||||||||||||||||||| |||||||||||||||||    
T  30475293 tgttttaaaccaccaaaaagaaagaagtttgatattttccaaaatctga------cggctctcttttgaagagaaaattctaactttcttctgccttcca 30475200  T
Q  200 tttggttaacttgcattgtttgttgaatctcttcttct 237  Q
    |||| |||||||||||||||| ||||||||||||||||    
T  30475199 tttgtttaacttgcattgtttattgaatctcttcttct 30475162  T

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Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 25090162 - 25090345
Alignment:
Q  1 catcatagtctgaaacaaaataaaagcattagccag-ccccaagcataaaaataagttctggcagcagttatgaaacttataatgataaacagtcaaatg 99  Q
    ||||| |||||||||||||||||||||| ||| | | |||||| | |||||||  ||| ||||| ||   ||| |||||||||||||||||||| |||||    
T  25090162 catcagagtctgaaacaaaataaaagcaatagtcggtccccaaacttaaaaatgggttatggcaccaaccatggaacttataatgataaacagtaaaatg 25090261  T
Q  100 tgttttaaaccaccaaaaggaaagaagcttgatattttccaaaacctgataaggtgtgctctcttttgaagagaaaattctagc 183  Q
    || ||||||| |||||||||||||||||||||||||| |||| |  |||||||||||||||||||||| | |||||||||||||    
T  25090262 tgctttaaactaccaaaaggaaagaagcttgatatttcccaagagatgataaggtgtgctctcttttggaaagaaaattctagc 25090345  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 189
Target Start/End: Complemental strand, 32794336 - 32794250
Alignment:
Q  103 tttaaaccaccaaaaggaaagaagcttgatattttccaaaacctgataaggtgtgctctcttttgaagagaaaattctagctttctt 189  Q
    |||| |||||||||||||||||||||||||||||| ||| | ||| ||| ||||||||||||||||   |||| ||||||| |||||    
T  32794336 tttataccaccaaaaggaaagaagcttgatatttttcaagagctggtaaagtgtgctctcttttgatcggaaagttctagcattctt 32794250  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 183
Target Start/End: Original strand, 1073251 - 1073331
Alignment:
Q  103 tttaaaccaccaaaaggaaagaagcttgatattttccaaaacctgataaggtgtgctctcttttgaagagaaaattctagc 183  Q
    |||||||||||||||| ||||||| ||||| ||||||||||  |||||||||||||| |||| || | | |||||||||||    
T  1073251 tttaaaccaccaaaagaaaagaagtttgatgttttccaaaaattgataaggtgtgctttcttgtgcacaaaaaattctagc 1073331  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 25268803 - 25268763
Alignment:
Q  103 tttaaaccaccaaaaggaaagaagcttgatattttccaaaa 143  Q
    ||||||||||||||| ||||||||||| ||||| |||||||    
T  25268803 tttaaaccaccaaaatgaaagaagcttaatattctccaaaa 25268763  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 98 - 167
Target Start/End: Complemental strand, 38540336 - 38540267
Alignment:
Q  98 tgtgttttaaaccaccaaaaggaaagaagcttgatattttccaaaacctgataaggtgtgctctcttttg 167  Q
    ||||||||  |||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||    
T  38540336 tgtgttttgtaccaccaaaaggaaagaagcttgatatttttcaagagctgataaggtgtgctctcttttg 38540267  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 44003517 - 44003562
Alignment:
Q  104 ttaaaccaccaaaaggaaagaagcttgatattttccaaaacctgataa 151  Q
    ||||||||||||||  |||||||||||||||||||||||| |||||||    
T  44003517 ttaaaccaccaaaa--aaagaagcttgatattttccaaaaactgataa 44003562  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 166
Target Start/End: Original strand, 20681500 - 20681628
Alignment:
Q  38 cccaagcataaaaataagttctggcagcagttatgaaacttataatgataaacagtcaaatgtgttttaaaccaccaaaaggaaagaagcttgatatttt 137  Q
    ||||||||||||||| ||||| | || || | || ||| ||||||||| ||  |   ||||| | |||||||||||||||| ||||||||||||||||||    
T  20681500 cccaagcataaaaatgagttccgacaccaatcataaaatttataatgaaaagtaacaaaatgagctttaaaccaccaaaagaaaagaagcttgatatttt 20681599  T
Q  138 ccaaaacctgataaggtgtgctctctttt 166  Q
    |||||| ||||||||| ||||| ||||||    
T  20681600 ccaaaagctgataaggagtgctttctttt 20681628  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 153
Target Start/End: Original strand, 40489709 - 40489755
Alignment:
Q  107 aaccaccaaaaggaaagaagcttgatattttccaaaacctgataagg 153  Q
    ||||||||||||||||||||||||||| | |||||||  ||||||||    
T  40489709 aaccaccaaaaggaaagaagcttgatactctccaaaagttgataagg 40489755  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 153
Target Start/End: Original strand, 40516210 - 40516256
Alignment:
Q  107 aaccaccaaaaggaaagaagcttgatattttccaaaacctgataagg 153  Q
    |||||||||||||||| |||||||||| | ||||||| |||||||||    
T  40516210 aaccaccaaaaggaaataagcttgatactctccaaaagctgataagg 40516256  T

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Target: scaffold0728 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: scaffold0728
Description:

Target: scaffold0728; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 167
Target Start/End: Complemental strand, 2163 - 2021
Alignment:
Q  29 ttagccagc-cccaagcataaaaataagttctggcagcagt---tatgaaacttataatgataaacagtcaaatgtgttttaaaccaccaaaaggaaaga 124  Q
    ||||||||| |||||||||||||||  |||||| || || |   ||| ||| |||||||||||||||   || |||| |||| | |||||||| ||||||    
T  2163 ttagccagcacccaagcataaaaatgggttctgacaccaatcattattaaaattataatgataaacaaaaaattgtgctttatatcaccaaaaagaaaga 2064  T
Q  125 agcttgatattttccaaaacctgataaggtgtgctctcttttg 167  Q
    |||||||| ||||| || | |||||||||||||||||||||||    
T  2063 agcttgatgttttctaagagctgataaggtgtgctctcttttg 2021  T

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Target: scaffold0728; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 167
Target Start/End: Complemental strand, 7103 - 6961
Alignment:
Q  29 ttagccagc-cccaagcataaaaataagttctggcagcagt---tatgaaacttataatgataaacagtcaaatgtgttttaaaccaccaaaaggaaaga 124  Q
    ||||||||| |||||||||||||||  |||||| || || |   ||| ||| |||||||||||||||   || |||| |||| | |||||||| ||||||    
T  7103 ttagccagcacccaagcataaaaatgggttctgacaccaatcattattaaaattataatgataaacaaaaaattgtgctttatatcaccaaaaagaaaga 7004  T
Q  125 agcttgatattttccaaaacctgataaggtgtgctctcttttg 167  Q
    |||||||| ||||| || | |||||||||||||||||||||||    
T  7003 agcttgatgttttctaagagctgataaggtgtgctctcttttg 6961  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 19924984 - 19925057
Alignment:
Q  110 caccaaaaggaaagaagcttgatattttccaaaacctgataaggtgtgctctcttttgaagagaaaattctagc 183  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||  ||| ||| |  ||||||||||||    
T  19924984 caccaaaaggaaagaagcttgatgttttccaaaagctgataaggtgtgcattctattgcacggaaaattctagc 19925057  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 183
Target Start/End: Original strand, 44665467 - 44665547
Alignment:
Q  103 tttaaaccaccaaaaggaaagaagcttgatattttccaaaacctgataaggtgtgctctcttttgaagagaaaattctagc 183  Q
    ||||||||||||||| ||||| || ||||| |||||||||| || ||||| |||||| ||||||  |  ||||||||||||    
T  44665467 tttaaaccaccaaaaagaaaggagtttgattttttccaaaagctaataagttgtgctttcttttacatggaaaattctagc 44665547  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 16239371 - 16239311
Alignment:
Q  108 accaccaaaaggaaagaagcttgatattttccaaaacctgataaggtgtgctctcttttga 168  Q
    |||||| ||| ||||||||||| ||||||||||| | |||| | | |||||||||||||||    
T  16239371 accacctaaaagaaagaagctttatattttccaagagctgacatgatgtgctctcttttga 16239311  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 28230816 - 28230856
Alignment:
Q  103 tttaaaccaccaaaaggaaagaagcttgatattttccaaaa 143  Q
    ||||||||||||||||||||||||||| | ||||| |||||    
T  28230816 tttaaaccaccaaaaggaaagaagcttaacatttttcaaaa 28230856  T

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Target: scaffold0792 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0792
Description:

Target: scaffold0792; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 104 - 183
Target Start/End: Original strand, 1587 - 1666
Alignment:
Q  104 ttaaaccaccaaaaggaaagaagcttgatattttccaaaacctgataaggtgtgctctcttttgaagagaaaattctagc 183  Q
    ||||||||||||||| ||||||| ||||| ||||||||||  |||||||||||||| |||| || | | |||||||||||    
T  1587 ttaaaccaccaaaagaaaagaagtttgatgttttccaaaaattgataaggtgtgctttcttgtgcacaaaaaattctagc 1666  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 14460193 - 14460314
Alignment:
Q  21 taaaagcattagccagc-cccaagcataaaaataagttctggcagcagttatgaaacttataatgataaacagtcaaat-gtgttttaaaccaccaaaag 118  Q
    ||||| ||| ||||||| |||||||||||||||  |||||| || || |  ||||||||| ||||||||||| |||||| ||| |||| || |||||||     
T  14460193 taaaaacatcagccagcacccaagcataaaaattggttctgacaccattcgtgaaacttagaatgataaaca-tcaaatagtgctttagacaaccaaaa- 14460290  T
Q  119 gaaagaagcttgatattttccaaa 142  Q
    ||||||||||||||||||| ||||    
T  14460291 gaaagaagcttgatatttttcaaa 14460314  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 161
Target Start/End: Complemental strand, 17186272 - 17186225
Alignment:
Q  114 aaaaggaaagaagcttgatattttccaaaacctgataaggtgtgctct 161  Q
    |||| ||||||||||||||||||||||| | |||||||||||||||||    
T  17186272 aaaatgaaagaagcttgatattttccaagagctgataaggtgtgctct 17186225  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 17111604 - 17111567
Alignment:
Q  106 aaaccaccaaaaggaaagaagcttgatattttccaaaa 143  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  17111604 aaaccaccaaaaggaaaaaagcttaatattttccaaaa 17111567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 15107276 - 15107236
Alignment:
Q  103 tttaaaccaccaaaaggaaagaagcttgatattttccaaaa 143  Q
    ||||||||||||||| ||||||||||| ||||| |||||||    
T  15107276 tttaaaccaccaaaaagaaagaagcttaatattctccaaaa 15107236  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 148
Target Start/End: Complemental strand, 23409765 - 23409719
Alignment:
Q  102 ttttaaaccaccaaaaggaaagaagcttgatattttccaaaacctga 148  Q
    |||||||||||||||||||||||||||| | ||| ||||||| ||||    
T  23409765 ttttaaaccaccaaaaggaaagaagcttaacattctccaaaagctga 23409719  T

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