View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11423_low_3 (Length: 535)
Name: NF11423_low_3
Description: NF11423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11423_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 486
Target Start/End: Original strand, 6917436 - 6917921
Alignment:
| Q |
1 |
gcaacaggaaacaggtactatccggagacgagtttgaagccgggagcacttcgctccccatacagaggtcacaactgtccagaaaggcaagttccaggcc |
100 |
Q |
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| T |
6917436 |
gcaacagggaacaggtactatccggagacgagtttgaagccgggagcacttcgctccccatacagaggtcacaactgtccagaatggcaagttccaggcc |
6917535 |
T |
|
| Q |
101 |
atcaagattgagcgcggcgaggttgattccgaaacatataggttctgattttccttttgcttgttgtttgagcacactcaatataaaatgctaaatgcac |
200 |
Q |
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| T |
6917536 |
atcaagattgagcgcggcgaggttgatttcgaaacatataggttctgattttccatttgcttgttgtttgagcacactcaatataaaatgctaaatgcac |
6917635 |
T |
|
| Q |
201 |
agacttattattcaataataatattgatcacaaacactcagtttccactaagagatggtgcagggccaagtgataagtaatttttgcactatttgatgac |
300 |
Q |
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| T |
6917636 |
agacttattattcaataataatattgatcacaaacactcagtttccactaagagatggtgcagggccaagtgataagtaatttttgcactatttgatgac |
6917735 |
T |
|
| Q |
301 |
tgttcttggcacacatgcatgctgtttccacgcctgtgttatggttggttgagaggctatgatgttaacataatttgtccactggtgttgaaaagtcaaa |
400 |
Q |
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||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6917736 |
tgttcttggcacatatgcatgatgtttccacgcctgtgttatggttggttgagaggctatgatgttaacataatttgtccactggtgttgaaaagtcaaa |
6917835 |
T |
|
| Q |
401 |
tggcttatgtcatgagaacaacaaggttacatggtcgtttccaagatcaatggtaaaggttaaaaacttgaagtaatggtaatttg |
486 |
Q |
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| T |
6917836 |
tggcttatgtcatgagaacaacaaggttacatggtcatttccaagatcaacggtaaaggttaaaaacttgaagtaatggtaatttg |
6917921 |
T |
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