View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11423_low_4 (Length: 525)
Name: NF11423_low_4
Description: NF11423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11423_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Original strand, 28733624 - 28734134
Alignment:
| Q |
1 |
ttattggagagagagacaaaactacaaaatataactgaagagaacaatacacttaagatggaaataaagagagaggagttagagaagaataaaatcatgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28733624 |
ttattggagagagagacaaaactacaaaatataactgaagagaacaatacacttaagatggaaataaagagagaggagttagagaagaataaaatcatgg |
28733723 |
T |
|
| Q |
101 |
atgaggctgttgcttccgctgaggcagcaagggccgcggagcgagaggctttgacaaaactcagctacataacagaagaagctgatgaaagtaaccgaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28733724 |
atgaggctgttgcttccgctgaggcagcaagggccgcggagcgagaggctttgacaaaactcagctacataacagaagaagctgatgaaagtaaccgaat |
28733823 |
T |
|
| Q |
201 |
gataacacgtgtaactgaggagttagatactgcacaggcgtcaaatttggaattagaggctgaattaaggagattgaaagtacagtcagatcaatggagg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28733824 |
gataacacgtgtaactgaggagttagatactgcacaggcgtcaaatttggagttagaggctgaattaaggagattgaaagtacagtcagatcaatggagg |
28733923 |
T |
|
| Q |
301 |
aaagcagctgaagcagctgctgctatgatttcttcaggaaacaataatnnnnnnnttgtggagagaaccggttcacttgacggtggctacaacaattcta |
400 |
Q |
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| T |
28733924 |
aaagcagctgaagcagctgctgctataatttcttcaggaaacaataataaaaaaattgtggagagaaccggttcacttgacggtggctacaacaattcta |
28734023 |
T |
|
| Q |
401 |
ctattggtaacaagatgagttcaccttattcggaagaaactgatgatgactcacctaagaagaaaaatacaaccatgttgaagaagattggagtgttgtg |
500 |
Q |
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| T |
28734024 |
ctattggtaacaagatgagttcaccttattcagaagaaactgatgatgactcacctaagaagaaaaatacaaccatgttgaagaagattggagtgttgtg |
28734123 |
T |
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| Q |
501 |
gaagaagaatc |
511 |
Q |
| |
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||||||||||| |
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| T |
28734124 |
gaagaagaatc |
28734134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 415 - 511
Target Start/End: Original strand, 22110965 - 22111061
Alignment:
| Q |
415 |
atgagttcaccttattcggaagaaactgatgatgactcacctaagaagaaaaatacaaccatgttgaagaagattggagtgttgtggaagaagaatc |
511 |
Q |
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|||| |||||| |||| ||||| || |||||||| || || ||||||||||| | || |||| |||||||||||||||||||||||| |||||||| |
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| T |
22110965 |
atgaattcaccctatttagaagacacggatgatgagtccccaaagaagaaaaacaaaaacatgctgaagaagattggagtgttgtggaggaagaatc |
22111061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 415 - 511
Target Start/End: Complemental strand, 40583624 - 40583528
Alignment:
| Q |
415 |
atgagttcaccttattcggaagaaactgatgatgactcacctaagaagaaaaatacaaccatgttgaagaagattggagtgttgtggaagaagaatc |
511 |
Q |
| |
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|||| |||||| |||| ||||| || |||||||| || || ||||||||||| | || |||| |||||||||||||||||||||||| |||||||| |
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| T |
40583624 |
atgaattcaccctatttagaagacacggatgatgagtccccaaagaagaaaaacaaaaacatgctgaagaagattggagtgttgtggaggaagaatc |
40583528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 317
Target Start/End: Original strand, 22110677 - 22110870
Alignment:
| Q |
124 |
gcagcaagggccgcggagcgagaggctttgacaaaactcagctacataacagaagaagctgatgaaagtaaccgaatgataacacgtgtaactgaggagt |
223 |
Q |
| |
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||||||||||| || ||| |||||||||||| ||||| ||||| ||| |||||||| ||| |||||||| ||| | | ||||||||||| || |
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| T |
22110677 |
gcagcaagggctgcagagaaagaggctttgacgaaacttagctatgtaatggaagaagcggataaaagtaacagaagagtggctcgtgtaactgaacagc |
22110776 |
T |
|
| Q |
224 |
tagatactgcacaggcgtcaaatttggaattagaggctgaattaaggagattgaaagtacagtcagatcaatggaggaaagcagctgaagcagc |
317 |
Q |
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||||| |||| ||||| | |||| || | || || |||||||||||||||||||| ||||| ||||| ||||| ||||||||||| ||||| |
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| T |
22110777 |
tagatgctgctcaggctgcgaattcagagctggaagccgaattaaggagattgaaagttcagtctgatcagtggagaaaagcagctgaggcagc |
22110870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 317
Target Start/End: Complemental strand, 40583912 - 40583719
Alignment:
| Q |
124 |
gcagcaagggccgcggagcgagaggctttgacaaaactcagctacataacagaagaagctgatgaaagtaaccgaatgataacacgtgtaactgaggagt |
223 |
Q |
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||||||||||| || ||| |||||||||||| ||||| ||||| ||| |||||||| ||| |||||||| ||| | | ||||||||||| || |
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| T |
40583912 |
gcagcaagggctgcagagaaagaggctttgacgaaacttagctatgtaatggaagaagcggataaaagtaacagaagagtggctcgtgtaactgaacagc |
40583813 |
T |
|
| Q |
224 |
tagatactgcacaggcgtcaaatttggaattagaggctgaattaaggagattgaaagtacagtcagatcaatggaggaaagcagctgaagcagc |
317 |
Q |
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||||| |||| ||||| | |||| || | || || |||||||||||||||||||| ||||| ||||| ||||| ||||||||||| ||||| |
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| T |
40583812 |
tagatgctgctcaggctgcgaattcagagctggaagccgaattaaggagattgaaagttcagtctgatcagtggagaaaagcagctgaggcagc |
40583719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 280 - 345
Target Start/End: Original strand, 22473060 - 22473125
Alignment:
| Q |
280 |
gtacagtcagatcaatggaggaaagcagctgaagcagctgctgctatgatttcttcaggaaacaat |
345 |
Q |
| |
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|||||||| |||||||||||||| || || || |||||||||||||||||||| |||| |||||| |
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| T |
22473060 |
gtacagtctgatcaatggaggaaggctgcagaggcagctgctgctatgatttcggcagggaacaat |
22473125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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