View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11423_low_5 (Length: 501)

Name: NF11423_low_5
Description: NF11423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11423_low_5
NF11423_low_5
[»] chr4 (8 HSPs)
chr4 (123-484)||(24421448-24421809)
chr4 (123-484)||(24469914-24470275)
chr4 (365-484)||(24477878-24477997)
chr4 (176-351)||(24406613-24406780)
chr4 (126-264)||(24477732-24477870)
chr4 (166-232)||(24482208-24482274)
chr4 (167-219)||(24421423-24421475)
chr4 (167-219)||(24470248-24470300)
[»] scaffold0879 (1 HSPs)
scaffold0879 (242-484)||(4174-4416)
[»] chr1 (31 HSPs)
chr1 (170-222)||(11905424-11905476)
chr1 (170-222)||(11882579-11882631)
chr1 (191-227)||(11888233-11888269)
chr1 (191-227)||(11888281-11888317)
chr1 (191-227)||(11888329-11888365)
chr1 (191-227)||(11888377-11888413)
chr1 (191-227)||(11888425-11888461)
chr1 (191-227)||(11888473-11888509)
chr1 (191-227)||(11888521-11888557)
chr1 (191-227)||(11888569-11888605)
chr1 (191-227)||(11888617-11888653)
chr1 (191-227)||(11888665-11888701)
chr1 (191-227)||(11888713-11888749)
chr1 (191-227)||(11888761-11888797)
chr1 (191-227)||(11888809-11888845)
chr1 (191-227)||(11888857-11888893)
chr1 (191-227)||(11888905-11888941)
chr1 (191-227)||(11888953-11888989)
chr1 (191-227)||(11889001-11889037)
chr1 (191-227)||(11889049-11889085)
chr1 (191-227)||(11889097-11889133)
chr1 (191-227)||(11889145-11889181)
chr1 (191-227)||(11889193-11889229)
chr1 (191-227)||(11889241-11889277)
chr1 (191-227)||(11889289-11889325)
chr1 (191-227)||(11889337-11889373)
chr1 (191-227)||(11889385-11889421)
chr1 (191-227)||(11889433-11889469)
chr1 (191-227)||(11889481-11889517)
chr1 (191-227)||(11889529-11889565)
chr1 (170-222)||(11891813-11891865)


Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 123 - 484
Target Start/End: Original strand, 24421448 - 24421809
Alignment:
Q  123 atggtggaggtggagatttataataataaggtgggtatttgtggacatagggaggtggtggtgatgaagatggtggaggtggggatttgtagtaatatgg 222  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||| |||| ||| |||||||||||||||||||||||||||||    
T  24421448 atggtggaggtggagatttgtagtaataaggtgggtatttgtggacatatggaggtggtggcgatggagaaggtggaggtggggatttgtagtaatatgg 24421547  T
Q  223 aggtgatttgaaatagtaaggtggctgctgtccatgacttggtggtgttggttgcggatagttgttgtttggttggccgccatagtaaggcttataatca 322  Q
    ||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24421548 aggtgatttgaaataatatggtggctgttgtccatgacttggtggtgttggttgcggatagttgttgtttggttggccgccatagtaaggcttataatca 24421647  T
Q  323 tcagcagcgacactgcttgcaattacgcaaaatgctattgcgtagatgagttgaggcaaatgcctcaacccaaatgaggttcccatcttttttaagaatg 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24421648 tcagcagcgacactgcttgcaattacgcaaaatgctattgcgtagatgagttgaggcaaatgcctcaacccaaatgaggttcccatcttttttaagaatg 24421747  T
Q  423 tgtatttctgtactcagttccttggaagagtgatagctagttactgtgattgcttaagtttg 484  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24421748 tgtatttctgtactcagttccttggaagagtgatagctagttactgtgattgcttatgtttg 24421809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 123 - 484
Target Start/End: Complemental strand, 24470275 - 24469914
Alignment:
Q  123 atggtggaggtggagatttataataataaggtgggtatttgtggacatagggaggtggtggtgatgaagatggtggaggtggggatttgtagtaatatgg 222  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||| |||| ||| |||||||||||||||||||||||||||||    
T  24470275 atggtggaggtggagatttgtagtaataaggtgggtatttgtggacatatggaggtggtggcgatggagaaggtggaggtggggatttgtagtaatatgg 24470176  T
Q  223 aggtgatttgaaatagtaaggtggctgctgtccatgacttggtggtgttggttgcggatagttgttgtttggttggccgccatagtaaggcttataatca 322  Q
    ||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24470175 aggtgatttgaaataatatggtggctgttgtccatgacttggtggtgttggttgcggatagttgttgtttggttggccgccatagtaaggcttataatca 24470076  T
Q  323 tcagcagcgacactgcttgcaattacgcaaaatgctattgcgtagatgagttgaggcaaatgcctcaacccaaatgaggttcccatcttttttaagaatg 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24470075 tcagcagcgacactgcttgcaattacgcaaaatgctattgcgtagatgagttgaggcaaatgcctcaacccaaatgaggttcccatcttttttaagaatg 24469976  T
Q  423 tgtatttctgtactcagttccttggaagagtgatagctagttactgtgattgcttaagtttg 484  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24469975 tgtatttctgtactcagttccttggaagagtgatagctagttactgtgattgcttatgtttg 24469914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 365 - 484
Target Start/End: Original strand, 24477878 - 24477997
Alignment:
Q  365 tagatgagttgaggcaaatgcctcaacccaaatgaggttcccatcttttttaagaatgtgtatttctgtactcagttccttggaagagtgatagctagtt 464  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24477878 tagatgagttgaggcaaatgcctcaacccaaatgaggttcccatcttttttaagaatgtgtatttctgtactcagttccttggaagagtgatagctagtt 24477977  T
Q  465 actgtgattgcttaagtttg 484  Q
    ||||||||||||||||||||    
T  24477978 actgtgattgcttaagtttg 24477997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 176 - 351
Target Start/End: Original strand, 24406613 - 24406780
Alignment:
Q  176 ggtggtggtgatgaagatggtggaggtggggatttgtagtaatatggaggtgatttgaaatagtaaggtggctgctgtccatgacttggtggtgttggtt 275  Q
    ||||||||||||| |||||||||||||||||  ||||||||||||||||||| ||||||||| || ||||||||||| |||||||||||||||||| |||    
T  24406613 ggtggtggtgatggagatggtggaggtggggtcttgtagtaatatggaggtggtttgaaataatatggtggctgctggccatgacttggtggtgttagtt 24406712  T
Q  276 gcggatagttgttgtttggttggccgccatagtaaggcttataatcatcagcagcgacactgcttgcaattacgca 351  Q
    | |||||||||||||||||        |||||||||||||||||||||||||| | ||| | ||||||||||||||    
T  24406713 gtggatagttgttgtttgg--------catagtaaggcttataatcatcagcaacaacaatacttgcaattacgca 24406780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 126 - 264
Target Start/End: Original strand, 24477732 - 24477870
Alignment:
Q  126 gtggaggtggagatttataataataaggtgggtatttgtggacatagggaggtggtggtgatgaagatggtggaggtggggatttgtagtaatatggagg 225  Q
    ||||||||||| || | || ||||||||||||||||||  ||||||||||||||| ||||||  |||||| ||||||||| | |||||||||||||||||    
T  24477732 gtggaggtggatatatgtagtaataaggtgggtatttgcagacatagggaggtggaggtgatagagatggcggaggtgggaacttgtagtaatatggagg 24477831  T
Q  226 tgatttgaaatagtaaggtggctgctgtccatgacttgg 264  Q
    ||||||| |||| || |||| ||||||||||||||||||    
T  24477832 tgatttggaataatatggtgcctgctgtccatgacttgg 24477870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 24482208 - 24482274
Alignment:
Q  166 gacatagggaggtggtggtgatgaagatggtggaggtggggatttgtagtaatatggaggtgatttg 232  Q
    |||||| |||||||||||||||| ||||||||| ||||| ||||||||||||||||| ||| |||||    
T  24482208 gacataaggaggtggtggtgatggagatggtggtggtggagatttgtagtaatatggtggtaatttg 24482274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 24421423 - 24421475
Alignment:
Q  167 acatagggaggtggtggtgatgaagatggtggaggtggggatttgtagtaata 219  Q
    ||||| ||||| |||||||| | ||||||||||||||| ||||||||||||||    
T  24421423 acatacggaggaggtggtgagggagatggtggaggtggagatttgtagtaata 24421475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 24470300 - 24470248
Alignment:
Q  167 acatagggaggtggtggtgatgaagatggtggaggtggggatttgtagtaata 219  Q
    ||||| ||||| |||||||| | ||||||||||||||| ||||||||||||||    
T  24470300 acatacggaggaggtggtgagggagatggtggaggtggagatttgtagtaata 24470248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 242 - 484
Target Start/End: Complemental strand, 4416 - 4174
Alignment:
Q  242 ggtggctgctgtccatgacttggtggtgttggttgcggatagttgttgtttggttggccgccatagtaaggcttataatcatcagcagcgacactgcttg 341  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4416 ggtggctgttgtccatgacttggtggtgttggttgcggatagttgttgtttggttggccgccatagtaaggcttataatcatcagcagcgacactgcttg 4317  T
Q  342 caattacgcaaaatgctattgcgtagatgagttgaggcaaatgcctcaacccaaatgaggttcccatcttttttaagaatgtgtatttctgtactcagtt 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4316 caattacgcaaaatgctattgcgtagatgagttgaggcaaatgcctcaacccaaatgaggttcccatcttttttaagaatgtgtatttctgtactcagtt 4217  T
Q  442 ccttggaagagtgatagctagttactgtgattgcttaagtttg 484  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  4216 ccttggaagagtgatagctagttactgtgattgcttatgtttg 4174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 11905476 - 11905424
Alignment:
Q  170 tagggaggtggtggtgatgaagatggtggaggtggggatttgtagtaatatgg 222  Q
    |||||||| ||||||||||  |||||||| ||||| |||||||||||||||||    
T  11905476 tagggagggggtggtgatggtgatggtggtggtggagatttgtagtaatatgg 11905424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 11882631 - 11882579
Alignment:
Q  170 tagggaggtggtggtgatgaagatggtggaggtggggatttgtagtaatatgg 222  Q
    |||||||| ||||| ||||  |||||||| ||||| |||||||||||||||||    
T  11882631 tagggagggggtggggatggtgatggtggtggtggagatttgtagtaatatgg 11882579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 11888269 - 11888233
Alignment:
Q  191 gatggtggaggtggggatttgtagtaatatggaggtg 227  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  11888269 gatggtggaggtggggatttgtagtagtatggtggtg 11888233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 11888317 - 11888281
Alignment:
Q  191 gatggtggaggtggggatttgtagtaatatggaggtg 227  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  11888317 gatggtggaggtggggatttgtagtagtatggtggtg 11888281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 11888365 - 11888329
Alignment:
Q  191 gatggtggaggtggggatttgtagtaatatggaggtg 227  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  11888365 gatggtggaggtggggatttgtagtagtatggtggtg 11888329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 11888413 - 11888377
Alignment:
Q  191 gatggtggaggtggggatttgtagtaatatggaggtg 227  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  11888413 gatggtggaggtggggatttgtagtagtatggtggtg 11888377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 11888461 - 11888425
Alignment:
Q  191 gatggtggaggtggggatttgtagtaatatggaggtg 227  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  11888461 gatggtggaggtggggatttgtagtagtatggtggtg 11888425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 11888509 - 11888473
Alignment:
Q  191 gatggtggaggtggggatttgtagtaatatggaggtg 227  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  11888509 gatggtggaggtggggatttgtagtagtatggtggtg 11888473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 11888557 - 11888521
Alignment:
Q  191 gatggtggaggtggggatttgtagtaatatggaggtg 227  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  11888557 gatggtggaggtggggatttgtagtagtatggtggtg 11888521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 11888605 - 11888569
Alignment:
Q  191 gatggtggaggtggggatttgtagtaatatggaggtg 227  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  11888605 gatggtggaggtggggatttgtagtagtatggtggtg 11888569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 11888653 - 11888617
Alignment:
Q  191 gatggtggaggtggggatttgtagtaatatggaggtg 227  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  11888653 gatggtggaggtggggatttgtagtagtatggtggtg 11888617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 11888701 - 11888665
Alignment:
Q  191 gatggtggaggtggggatttgtagtaatatggaggtg 227  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  11888701 gatggtggaggtggggatttgtagtagtatggtggtg 11888665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 11888749 - 11888713
Alignment:
Q  191 gatggtggaggtggggatttgtagtaatatggaggtg 227  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  11888749 gatggtggaggtggggatttgtagtagtatggtggtg 11888713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 11888797 - 11888761
Alignment:
Q  191 gatggtggaggtggggatttgtagtaatatggaggtg 227  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  11888797 gatggtggaggtggggatttgtagtagtatggtggtg 11888761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 11888845 - 11888809
Alignment:
Q  191 gatggtggaggtggggatttgtagtaatatggaggtg 227  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  11888845 gatggtggaggtggggatttgtagtagtatggtggtg 11888809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 11888893 - 11888857
Alignment:
Q  191 gatggtggaggtggggatttgtagtaatatggaggtg 227  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  11888893 gatggtggaggtggggatttgtagtagtatggtggtg 11888857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 11888941 - 11888905
Alignment:
Q  191 gatggtggaggtggggatttgtagtaatatggaggtg 227  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  11888941 gatggtggaggtggggatttgtagtagtatggtggtg 11888905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 11888989 - 11888953
Alignment:
Q  191 gatggtggaggtggggatttgtagtaatatggaggtg 227  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  11888989 gatggtggaggtggggatttgtagtagtatggtggtg 11888953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 11889037 - 11889001
Alignment:
Q  191 gatggtggaggtggggatttgtagtaatatggaggtg 227  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  11889037 gatggtggaggtggggatttgtagtagtatggtggtg 11889001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 11889085 - 11889049
Alignment:
Q  191 gatggtggaggtggggatttgtagtaatatggaggtg 227  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  11889085 gatggtggaggtggggatttgtagtagtatggtggtg 11889049  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 11889133 - 11889097
Alignment:
Q  191 gatggtggaggtggggatttgtagtaatatggaggtg 227  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  11889133 gatggtggaggtggggatttgtagtagtatggtggtg 11889097  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 11889181 - 11889145
Alignment:
Q  191 gatggtggaggtggggatttgtagtaatatggaggtg 227  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  11889181 gatggtggaggtggggatttgtagtagtatggtggtg 11889145  T

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Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 11889229 - 11889193
Alignment:
Q  191 gatggtggaggtggggatttgtagtaatatggaggtg 227  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  11889229 gatggtggaggtggggatttgtagtagtatggtggtg 11889193  T

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Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 11889277 - 11889241
Alignment:
Q  191 gatggtggaggtggggatttgtagtaatatggaggtg 227  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  11889277 gatggtggaggtggggatttgtagtagtatggtggtg 11889241  T

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Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 11889325 - 11889289
Alignment:
Q  191 gatggtggaggtggggatttgtagtaatatggaggtg 227  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  11889325 gatggtggaggtggggatttgtagtagtatggtggtg 11889289  T

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Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 11889373 - 11889337
Alignment:
Q  191 gatggtggaggtggggatttgtagtaatatggaggtg 227  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  11889373 gatggtggaggtggggatttgtagtagtatggtggtg 11889337  T

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Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 11889421 - 11889385
Alignment:
Q  191 gatggtggaggtggggatttgtagtaatatggaggtg 227  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  11889421 gatggtggaggtggggatttgtagtagtatggtggtg 11889385  T

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Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 11889469 - 11889433
Alignment:
Q  191 gatggtggaggtggggatttgtagtaatatggaggtg 227  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  11889469 gatggtggaggtggggatttgtagtagtatggtggtg 11889433  T

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Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 11889517 - 11889481
Alignment:
Q  191 gatggtggaggtggggatttgtagtaatatggaggtg 227  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  11889517 gatggtggaggtggggatttgtagtagtatggtggtg 11889481  T

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Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 11889565 - 11889529
Alignment:
Q  191 gatggtggaggtggggatttgtagtaatatggaggtg 227  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  11889565 gatggtggaggtggggatttgtagtagtatggtggtg 11889529  T

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Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 11891865 - 11891813
Alignment:
Q  170 tagggaggtggtggtgatgaagatggtggaggtggggatttgtagtaatatgg 222  Q
    |||||||| ||||| ||||  |||||||| ||||| |||||||||||||||||    
T  11891865 tagggagggggtggggatggtgatggtggtggtggagatttgtagtaatatgg 11891813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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