View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11423_low_7 (Length: 424)
Name: NF11423_low_7
Description: NF11423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11423_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 4 - 249
Target Start/End: Original strand, 44946002 - 44946247
Alignment:
| Q |
4 |
ggagaagcagagaagattagaggctgaggatgctgccatggggaagaagaacaggattactagagatagggatcgtgatataagtgagaaacttgatctt |
103 |
Q |
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| T |
44946002 |
ggagaaggagagaagattagaagctgaggatgctgccatggggaagaagagcaggattactagagatagggatcgtgatataagtgagaaacttgatctt |
44946101 |
T |
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| Q |
104 |
ggttatgcttctactaagcatgggacagagttcctgtacgatgaaaggctattcaacgagaataaatccaccttgttcacgccgaagaaagatgtttaca |
203 |
Q |
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| T |
44946102 |
ggttatgcttctcctaagcatgggacagaggttctgtacgatgaaaggctattcaacgaggataaatccaccttgttcacgccgaagaaagatgtttaca |
44946201 |
T |
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| Q |
204 |
cattgatgaagaagctggccgagtttgagcctgaaaaagctgatcc |
249 |
Q |
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| T |
44946202 |
cattgatgaagaagctggccgagtttgagcctgaaaaagctgatcc |
44946247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 310 - 409
Target Start/End: Original strand, 44946308 - 44946407
Alignment:
| Q |
310 |
gataaactcttgattgcttgttaaaactgtgctggttagtgcaaaattaggcttatgatgttgtcttttattgaaattttgttattgtcatgctccaact |
409 |
Q |
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| T |
44946308 |
gataaactcttgactgcttgttaaaactgtgctggttagtgcacaattaggcttatgatgttgtcttttattgaaattttgttattgtcatgctccaact |
44946407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 4 - 169
Target Start/End: Complemental strand, 11454944 - 11454779
Alignment:
| Q |
4 |
ggagaagcagagaagattagaggctgaggatgctgccatggggaagaagaacaggattactagagatagggatcgtgatataagtgagaaacttgatctt |
103 |
Q |
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| T |
11454944 |
ggagaaggagagaaggatagaagctaaggatgctgccatgggaaagaagagcaagattactagagatagggatcgtgatataagtgagaaagttgctctt |
11454845 |
T |
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| Q |
104 |
ggttatgcttctactaagcatgggacagagttcctgtacgatgaaaggctattcaacgagaataaa |
169 |
Q |
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| T |
11454844 |
ggtatggcttccaccaagcaagggacagaggtcatgtatgatgagaggctattcaaccaggataaa |
11454779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 395271 - 395347
Alignment:
| Q |
30 |
aggatgctgccatggggaagaagaacaggattactagagatagggatcgtgatataagtgagaaacttgatcttggt |
106 |
Q |
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| T |
395271 |
aggatgttggcatgggaaagaagtgcaagattactagagataaggatcgtgatataagtgagaaggttgctcttggt |
395347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 397
Target Start/End: Original strand, 51568223 - 51568309
Alignment:
| Q |
310 |
gataaactcttgattgcttgttaaaactgtgctggttagtgcaaaattaggcttatgatgttgtcttttattgaaattttgttattgt |
397 |
Q |
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| T |
51568223 |
gataaactcctggttgcttgttaaaactgtactggttag-acgcaattaggaatatgatgttgtcttttattgatcttttgctattgt |
51568309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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