View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11423_low_8 (Length: 370)
Name: NF11423_low_8
Description: NF11423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11423_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 4973483 - 4973836
Alignment:
| Q |
1 |
cacaaggatgtttatatttgaatatgctccaaatggaagcctatctgagcatctacatggtaatgctttttgttttagttcttacattgctcaaaacata |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4973483 |
cacaaggatgtttatatttgaatatgctccaaatggaagcctatctgagcatctacatggtaatgctttttgttttagttcttacattgctcaaaacatg |
4973582 |
T |
|
| Q |
101 |
gttttaaattacagttacggtcacgttgcagacttttatatt-gcagttgagatgttgttgcagaagcttcnnnnnnnnttatattgcaattgcaattgc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4973583 |
gttttaaattacagttacggtcacgttgcagacttttatatttgcagttgagatgttgttgcagaagcttcaaaaaaaattatattgcaattgcaattgc |
4973682 |
T |
|
| Q |
200 |
aaaccgcaatctaaataaaattatatcttgtaatttaaaggctaagttctgaatattttgtttcttaatttttcagttaaagaagttgaacgtcttagtt |
299 |
Q |
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|||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4973683 |
aaactgcaatctaagtaaaattatatcttgtagtttaaaggctaagttctgaatattttgtttcttaatttttcagttaaagaagttgaacgtcttagtt |
4973782 |
T |
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| Q |
300 |
ggagtgaaagggtaaggattataatgggaactgcctattgtcttcaatacatgc |
353 |
Q |
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| T |
4973783 |
ggagtgaaagggtaaggattataatgggaactgcctattgtcttcaatacatgc |
4973836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 4991391 - 4991744
Alignment:
| Q |
1 |
cacaaggatgtttatatttgaatatgctccaaatggaagcctatctgagcatctacatggtaatgctttttgttttagttcttacattgctcaaaacata |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4991391 |
cacaaggatgtttatatttgaatatgctccaaatggaagcctatctgagcatctacatggtaatgctttttgttttagttcttacattgctcaaaacatg |
4991490 |
T |
|
| Q |
101 |
gttttaaattacagttacggtcacgttgcagacttttatatt-gcagttgagatgttgttgcagaagcttcnnnnnnnnttatattgcaattgcaattgc |
199 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4991491 |
gttttaaattacagttacggtcacgttgcagacttttatatttgcagttgagatgttgttgcagaagcttcaaaaaaaattatattgcaattgcaattgc |
4991590 |
T |
|
| Q |
200 |
aaaccgcaatctaaataaaattatatcttgtaatttaaaggctaagttctgaatattttgtttcttaatttttcagttaaagaagttgaacgtcttagtt |
299 |
Q |
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|||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4991591 |
aaactgcaatctaagtaaaattatatcttgtagtttaaaggctaagttctgaatattttgtttcttaatttttcagttaaagaagttgaacgtcttagtt |
4991690 |
T |
|
| Q |
300 |
ggagtgaaagggtaaggattataatgggaactgcctattgtcttcaatacatgc |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4991691 |
ggagtgaaagggtaaggattataatgggaactgcctattgtcttcaatacatgc |
4991744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 35832190 - 35832150
Alignment:
| Q |
23 |
tatgctccaaatggaagcctatctgagcatctacatggtaa |
63 |
Q |
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|||||||||||||||||| ||| ||||||||||||||||| |
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| T |
35832190 |
tatgctccaaatggaagcttattcgagcatctacatggtaa |
35832150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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