View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11424_high_6 (Length: 319)
Name: NF11424_high_6
Description: NF11424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11424_high_6 |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 7e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 94 - 256
Target Start/End: Original strand, 49042671 - 49042833
Alignment:
| Q |
94 |
taaaagacttgggtatcgttggtttataaagcagagggacttgcgtttggagcaagctcaactgtcatttctttatagggaaaattacaaaatttgtttc |
193 |
Q |
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| T |
49042671 |
taaaagacttgggtatcgttggtttataaagcagagggacttgcgtttggagcaagctcaactgtcatttctttatagggaaaattacaaaatttgcttc |
49042770 |
T |
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| Q |
194 |
aacggaagctgtccctttcctttctttcattattaaatcaaaagtttaaatccattaatcttt |
256 |
Q |
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| T |
49042771 |
aacggaagctgtccctctcctttctttcattattaaatcaaaagtttaaatccattcatcttt |
49042833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 49042559 - 49042607
Alignment:
| Q |
1 |
ttagtctttctttatccatgtctatgctgttgcgacccatcaattactc |
49 |
Q |
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| T |
49042559 |
ttagtctttctttatccatgtctatgctgttgcgacccatcaattactc |
49042607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 319
Target Start/End: Original strand, 14547951 - 14547986
Alignment:
| Q |
284 |
gcaatacaccatttgacacctacacaaaaatctgac |
319 |
Q |
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| T |
14547951 |
gcaatacaccatttgacacccacacaaaaatctgac |
14547986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 319
Target Start/End: Complemental strand, 8346459 - 8346424
Alignment:
| Q |
284 |
gcaatacaccatttgacacctacacaaaaatctgac |
319 |
Q |
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| T |
8346459 |
gcaatacaccatttgacacccacacaaaaatctgac |
8346424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 319
Target Start/End: Original strand, 23608265 - 23608299
Alignment:
| Q |
285 |
caatacaccatttgacacctacacaaaaatctgac |
319 |
Q |
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| T |
23608265 |
caatacaccatttgacacccacacaaaaatctgac |
23608299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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