View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11424_low_2 (Length: 521)
Name: NF11424_low_2
Description: NF11424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11424_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 22 - 514
Target Start/End: Original strand, 26073961 - 26074462
Alignment:
| Q |
22 |
tgtgctctgcaggtgcatgccaatgaagttgtttcaatgaataattcattccatttatagtaatatctcccacttttccttcaaaatgcacctataaata |
121 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
26073961 |
tgtgctctgcaggtgcatgccaatgaagttgtttcaatgaataattcattccatttatattaatatctcccacttttccttcaaaatgcacctataaata |
26074060 |
T |
|
| Q |
122 |
ccaaactcaaccatattagttagttaatatcagaattttcctttgacaaaacctttacacttagaccttgctaataataataacaacaacga-------- |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
26074061 |
ccaaactcaaccatattagttagttaatatcagaattttcctttgacaaaacctttacacttagaccttgctaataataataataacaacaacaataata |
26074160 |
T |
|
| Q |
214 |
-taatagtaatagacatcagacaacaattatcgtatcagacatcaaacacgtttttatatgaagtgtcggtgttacatggttaatcaggtagccataatt |
312 |
Q |
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||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26074161 |
ataatagtaatatacatcagacaacaattatcgtatcaaacatcaaacacgttttcatatgaagtgtcggtgttacatggttaatcaggtagccataatt |
26074260 |
T |
|
| Q |
313 |
tttctttggagggaaaagtcttttcaattcaagttaattttcattttttaactgatttgttagttgatgaaattacataccccaatactgtattggtgat |
412 |
Q |
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|||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
26074261 |
tttctttggaaggaaaagtctttttaattcaagttaatttttattttttaactgatttgttagttgatgaaaatacataccccaatactgtattggtgat |
26074360 |
T |
|
| Q |
413 |
taacaagtgtggcatttgtaggaaggtagtttctgtctaaggatttcaatacattgttcacaacaatatttgtcattgcaagatccactggactctgtgc |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | | ||||| |||| || ||| ||| |||||||||||||||||| ||| |
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| T |
26074361 |
taacaagtgtggcatttgtaggaaggtagtttctgtctaaggatttcatatcctggttcatgacaacatctgttattacaagatccactggactctatgc |
26074460 |
T |
|
| Q |
513 |
tt |
514 |
Q |
| |
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|| |
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| T |
26074461 |
tt |
26074462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 241 - 514
Target Start/End: Original strand, 26093831 - 26094103
Alignment:
| Q |
241 |
tatcgtatcagacatcaaacacgtttttatatgaagtgtcggtgttacatggttaatcaggtagccataatttttctttggagggaaaagtcttttcaat |
340 |
Q |
| |
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||||| || |||||||||||| |||||||||| ||||||||||||||||| ||||||||| || || ||||||||||| || ||||||||||||||||| |
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| T |
26093831 |
tatcgcattagacatcaaacatgtttttatataaagtgtcggtgttacatagttaatcagataagcacaatttttctttagaaggaaaagtcttttcaat |
26093930 |
T |
|
| Q |
341 |
tcaagttaattttcattttttaactgatttgttagttgatgaaattacataccccaatactgtattggtgattaacaagtgtggcatttgtaggaaggta |
440 |
Q |
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| T |
26093931 |
tcaagttaatttttatttt-taactgatttgttagttgatgaaaatacataccccaatactgtattggtggttaacaagtgtggcatttgtaggaaggta |
26094029 |
T |
|
| Q |
441 |
gtttctgtctaaggatttcaatacattgttcacaacaatatttgtcattgcaagatccactggactctgtgctt |
514 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26094030 |
gtttctgtctaaggatttcaatacattgttcacaacaatatttgtcattgcaagatccactggactctgtgctt |
26094103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 22 - 174
Target Start/End: Original strand, 26093634 - 26093786
Alignment:
| Q |
22 |
tgtgctctgcaggtgcatgccaatgaagttgtttcaatgaataattcattccatttatagtaatatctcccacttttccttcaaaatgcacctataaata |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||| |
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| T |
26093634 |
tgtgctctgcaggtgcatgccaatgaagttgtttcaatgaataattcattccatttatattaatatcgcccacttttccttcaaaatgcacctatagata |
26093733 |
T |
|
| Q |
122 |
ccaaactcaaccatattagttagttaatatcagaattttcctttgacaaaacc |
174 |
Q |
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||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
26093734 |
ccaaactcaacaatattagttagttgatatcagaattttcctttgacaaaacc |
26093786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 357 - 514
Target Start/End: Original strand, 26105377 - 26105535
Alignment:
| Q |
357 |
tttttaactgatttgt-tagttgatgaaattacataccccaatactgtattggtgattaacaagtgtggcatttgtaggaaggtagtttctgtctaagga |
455 |
Q |
| |
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||||||| ||||||| ||||||||||| ||||||||||||| || |||||| ||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
26105377 |
tttttaagagatttgtatagttgatgaacatacataccccaatgttgaattggttgttaacaagtgtagcatttgtgggaaggtagtttctgtctaagga |
26105476 |
T |
|
| Q |
456 |
tttcaatacattgttcacaacaatatttgtcattgcaagatccactggactctgtgctt |
514 |
Q |
| |
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||||||| | | ||||| ||||||| ||||||| |||||||||||||||| ||||||| |
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| T |
26105477 |
tttcaattcctggttcatgacaatatctgtcattacaagatccactggactttgtgctt |
26105535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 26105042 - 26105163
Alignment:
| Q |
22 |
tgtgctctgcaggtgcatgccaatgaagttgtttcaatgaataattcattccatttatagtaatatctcccacttttccttcaaaatgcacctata-aat |
120 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||| | |
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| T |
26105042 |
tgtgctctgcaggtgcatgccagtgaagttgtctcaatgaataattcattccatttatgttaatatctcccactttaccttcaaaatgtacctatatttt |
26105141 |
T |
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| Q |
121 |
accaaactcaaccatattagtt |
142 |
Q |
| |
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| ||||||||||||||| |||| |
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| T |
26105142 |
aacaaactcaaccatatcagtt |
26105163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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