View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11424_low_3 (Length: 476)

Name: NF11424_low_3
Description: NF11424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11424_low_3
NF11424_low_3
[»] chr4 (16 HSPs)
chr4 (17-179)||(39137652-39137814)
chr4 (242-378)||(39137456-39137592)
chr4 (265-346)||(3155554-3155635)
chr4 (422-463)||(39137371-39137412)
chr4 (271-330)||(52326153-52326212)
chr4 (265-331)||(27043868-27043934)
chr4 (204-241)||(39137614-39137651)
chr4 (271-327)||(56480318-56480374)
chr4 (283-330)||(52746896-52746943)
chr4 (293-327)||(28300365-28300399)
chr4 (292-326)||(53294179-53294213)
chr4 (301-346)||(7601710-7601755)
chr4 (283-344)||(25885812-25885873)
chr4 (293-354)||(47946141-47946202)
chr4 (297-349)||(47800578-47800630)
chr4 (266-330)||(51630078-51630142)
[»] chr1 (18 HSPs)
chr1 (265-352)||(24915089-24915176)
chr1 (283-346)||(9572164-9572227)
chr1 (297-353)||(7028236-7028292)
chr1 (265-324)||(2294884-2294943)
chr1 (202-241)||(38115998-38116037)
chr1 (291-330)||(51190828-51190867)
chr1 (292-330)||(836404-836442)
chr1 (294-352)||(13809943-13810001)
chr1 (293-331)||(14576719-14576757)
chr1 (292-330)||(15477545-15477583)
chr1 (266-352)||(37769699-37769785)
chr1 (266-324)||(46225762-46225820)
chr1 (196-233)||(6292610-6292647)
chr1 (265-330)||(34290203-34290268)
chr1 (195-231)||(6659800-6659836)
chr1 (200-232)||(32958756-32958788)
chr1 (294-330)||(34619445-34619481)
chr1 (294-330)||(37841965-37842001)
[»] chr3 (9 HSPs)
chr3 (265-346)||(30956664-30956745)
chr3 (265-346)||(30972476-30972557)
chr3 (283-353)||(32095247-32095317)
chr3 (283-351)||(25447300-25447368)
chr3 (17-87)||(53046095-53046165)
chr3 (283-346)||(44061079-44061142)
chr3 (292-330)||(24684888-24684926)
chr3 (265-346)||(33405205-33405286)
chr3 (199-231)||(8007584-8007616)
[»] chr7 (13 HSPs)
chr7 (283-346)||(34083581-34083644)
chr7 (285-347)||(30180001-30180063)
chr7 (265-330)||(12110327-12110392)
chr7 (278-347)||(22283795-22283863)
chr7 (272-328)||(39907772-39907828)
chr7 (285-324)||(43694628-43694667)
chr7 (285-324)||(46280330-46280369)
chr7 (195-241)||(11782957-11783003)
chr7 (292-329)||(13960884-13960921)
chr7 (266-327)||(47177606-47177667)
chr7 (309-353)||(3968277-3968321)
chr7 (291-327)||(17248525-17248561)
chr7 (285-328)||(34672834-34672878)
[»] chr6 (7 HSPs)
chr6 (272-330)||(9093601-9093659)
chr6 (295-353)||(507164-507222)
chr6 (281-353)||(9559595-9559667)
chr6 (283-330)||(2735036-2735083)
chr6 (296-330)||(28621179-28621213)
chr6 (285-330)||(3785758-3785803)
chr6 (283-327)||(6909928-6909972)
[»] chr5 (11 HSPs)
chr5 (265-330)||(12425538-12425603)
chr5 (295-330)||(41819579-41819614)
chr5 (292-346)||(1465084-1465138)
chr5 (271-330)||(18857444-18857503)
chr5 (283-330)||(32372591-32372638)
chr5 (297-330)||(465921-465954)
chr5 (293-330)||(35446022-35446059)
chr5 (277-330)||(41981915-41981968)
chr5 (278-331)||(42646881-42646934)
chr5 (200-264)||(3280655-3280719)
chr5 (294-330)||(42582760-42582796)
[»] chr2 (9 HSPs)
chr2 (292-330)||(43199858-43199896)
chr2 (265-330)||(12464511-12464576)
chr2 (292-330)||(36114588-36114626)
chr2 (265-326)||(18066099-18066160)
chr2 (265-318)||(26626852-26626905)
chr2 (285-353)||(2416257-2416325)
chr2 (301-353)||(3611170-3611222)
chr2 (266-330)||(41851502-41851566)
chr2 (293-329)||(44439426-44439462)
[»] chr8 (6 HSPs)
chr8 (283-330)||(2482832-2482879)
chr8 (292-351)||(10758321-10758380)
chr8 (291-346)||(26771216-26771271)
chr8 (292-346)||(16733980-16734034)
chr8 (208-248)||(4390316-4390356)
chr8 (293-329)||(38036178-38036214)


Alignment Details
Target: chr4 (Bit Score: 159; Significance: 2e-84; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 39137814 - 39137652
Alignment:
Q  17 acaaactacattcatcattcctataagcattacaaaacttaaaattgtgtttgttacttacaaaattgatatagaaggtatcatcattcttaattttcaa 116  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39137814 acaaactacattcatcattcctctaagcattacaaaacttaaaattgtgtttgttacttacaaaattgatatagaaggtatcatcattcttaattttcaa 39137715  T
Q  117 atcttttacattaataccagatacaattagatatcttaatactatcaatcatggcattttgaa 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39137714 atcttttacattaataccagatacaattagatatcttaatactatcaatcatggcattttgaa 39137652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 242 - 378
Target Start/End: Complemental strand, 39137592 - 39137456
Alignment:
Q  242 cttatgaaaacagtttataacatgttctgcaagacagtttttgaaaacggcttatagcttatacaaaaacaatttaaatttattttatcccatgctatag 341  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||    
T  39137592 cttatgaaaacaatttataacatgttctgcaagacagtttttgaaaacggcttatagcttatacaaaaataattaaaatttattttatcctatgctatag 39137493  T
Q  342 aaataatttataatcactgaagattgaatgcagatag 378  Q
    |||||||||||||||||||||||||||||||||||||    
T  39137492 aaataatttataatcactgaagattgaatgcagatag 39137456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 346
Target Start/End: Complemental strand, 3155635 - 3155554
Alignment:
Q  265 gttctgcaagacagtttttgaaaacggcttatagcttatacaaaaacaatttaaatttattttatcccatgctatagaaata 346  Q
    ||||| ||||| ||||| ||||||| |||| |||||| |||||||||||||||| |||||||||||   |||||||||||||    
T  3155635 gttcttcaagatagtttatgaaaacagcttgtagcttgtacaaaaacaatttaactttattttatcttttgctatagaaata 3155554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 422 - 463
Target Start/End: Complemental strand, 39137412 - 39137371
Alignment:
Q  422 ggtgaagagtacatacttgtgggttttgtggcttcttctgtg 463  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  39137412 ggtgaagagtacatacttgtgggttttgtggcttcttctgtg 39137371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 330
Target Start/End: Original strand, 52326153 - 52326212
Alignment:
Q  271 caagacagtttttgaaaacggcttatagcttatacaaaaacaatttaaatttattttatc 330  Q
    ||||| ||||| |||||| ||||| |||||||||||| |||||||||| |||||||||||    
T  52326153 caagatagtttatgaaaaaggcttctagcttatacaacaacaatttaactttattttatc 52326212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 331
Target Start/End: Original strand, 27043868 - 27043934
Alignment:
Q  265 gttctgcaagacagtttttgaaaacggcttatagcttatacaaaaacaatttaaatttattttatcc 331  Q
    ||||| ||||| ||||| | |||||  |||||||||||||| |||||||||||| ||||||||||||    
T  27043868 gttctccaagatagtttataaaaacatcttatagcttatacgaaaacaatttaactttattttatcc 27043934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 39137651 - 39137614
Alignment:
Q  204 tagattgacttattttagcttatctactgaagtaagtt 241  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  39137651 tagattgacttattttagcttatatactgaagtaagtt 39137614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 327
Target Start/End: Complemental strand, 56480374 - 56480318
Alignment:
Q  271 caagacagtttttgaaaacggcttatagcttatacaaaaacaatttaaatttatttt 327  Q
    ||||| ||||| ||||||| ||||||| |||||||| ||||||||||| ||||||||    
T  56480374 caagatagtttatgaaaacagcttataacttatacataaacaatttaactttatttt 56480318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 330
Target Start/End: Original strand, 52746896 - 52746943
Alignment:
Q  283 tgaaaacggcttatagcttatacaaaaacaatttaaatttattttatc 330  Q
    ||||||| |||||| ||||| ||||||||||||||| |||||||||||    
T  52746896 tgaaaacagcttatggcttacacaaaaacaatttaactttattttatc 52746943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 327
Target Start/End: Original strand, 28300365 - 28300399
Alignment:
Q  293 ttatagcttatacaaaaacaatttaaatttatttt 327  Q
    |||||||||||||||||||||||||| ||||||||    
T  28300365 ttatagcttatacaaaaacaatttaactttatttt 28300399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 326
Target Start/End: Original strand, 53294179 - 53294213
Alignment:
Q  292 cttatagcttatacaaaaacaatttaaatttattt 326  Q
    |||||||| ||||||||||||||||||||||||||    
T  53294179 cttatagcatatacaaaaacaatttaaatttattt 53294213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 7601755 - 7601710
Alignment:
Q  301 tatacaaaaacaatttaaatttattttatcccatgctatagaaata 346  Q
    |||||||||||||||||| ||||||||||||  |||||||| ||||    
T  7601755 tatacaaaaacaatttaactttattttatcctttgctataggaata 7601710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 344
Target Start/End: Complemental strand, 25885873 - 25885812
Alignment:
Q  283 tgaaaacggcttatagcttatacaaaaacaatttaaatttattttatcccatgctatagaaa 344  Q
    |||||||  ||||||||||| || |||||||||||| |||||||||||   |||||||||||    
T  25885873 tgaaaacaacttatagcttacacgaaaacaatttaactttattttatcttttgctatagaaa 25885812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 354
Target Start/End: Complemental strand, 47946202 - 47946141
Alignment:
Q  293 ttatagcttatacaaaaacaatttaaatttattttatcccatgctatagaaataatttataa 354  Q
    ||||||||||||| |||||||||||| || ||||||||  | | ||||||||||| ||||||    
T  47946202 ttatagcttatacgaaaacaatttaacttcattttatcttacgttatagaaataacttataa 47946141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 349
Target Start/End: Complemental strand, 47800630 - 47800578
Alignment:
Q  297 agcttatacaaaaacaatttaaatttattttatcccatgctatagaaataatt 349  Q
    |||||||||||||||| ||||| |||||||||||   || |||||||||||||    
T  47800630 agcttatacaaaaacattttaactttattttatcttttgttatagaaataatt 47800578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 330
Target Start/End: Complemental strand, 51630142 - 51630078
Alignment:
Q  266 ttctgcaagacagtttttgaaaacggcttatagcttatacaaaaacaatttaaatttattttatc 330  Q
    |||| ||||| || || ||||||  ||||||||||||||  |||||||||||| |||||||||||    
T  51630142 ttcttcaagatagcttatgaaaatagcttatagcttatatcaaaacaatttaactttattttatc 51630078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 265 - 352
Target Start/End: Original strand, 24915089 - 24915176
Alignment:
Q  265 gttctgcaagacagtttttgaaaacggcttatagcttatacaaaaacaatttaaatttattttatcccatgctatagaaataatttat 352  Q
    ||||| |||||||| || ||||||| ||||||||| |||||||||||||||||| |||||||||||   ||||||||||||| |||||    
T  24915089 gttctccaagacagcttatgaaaacagcttatagcatatacaaaaacaatttaactttattttatcttctgctatagaaatagtttat 24915176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 283 - 346
Target Start/End: Original strand, 9572164 - 9572227
Alignment:
Q  283 tgaaaacggcttatagcttatacaaaaacaatttaaatttattttatcccatgctatagaaata 346  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||   |||||||||||||    
T  9572164 tgaaaacggcttatagcttatacaaaagcaatttaactttattttatcttttgctatagaaata 9572227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 353
Target Start/End: Complemental strand, 7028292 - 7028236
Alignment:
Q  297 agcttatacaaaaacaatttaaatttattttatcccatgctatagaaataatttata 353  Q
    ||||||||||||||||| |||| |||||||||||   ||||||||||||| ||||||    
T  7028292 agcttatacaaaaacaacttaactttattttatcttttgctatagaaatagtttata 7028236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 324
Target Start/End: Complemental strand, 2294943 - 2294884
Alignment:
Q  265 gttctgcaagacagtttttgaaaacggcttatagcttatacaaaaacaatttaaatttat 324  Q
    ||||| ||||| ||||| ||||||  ||||||||||||| |||||||||||||| |||||    
T  2294943 gttctccaagatagtttatgaaaatagcttatagcttatccaaaaacaatttaactttat 2294884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 241
Target Start/End: Original strand, 38115998 - 38116037
Alignment:
Q  202 tttagattgacttattttagcttatctactgaagtaagtt 241  Q
    ||||||||||||||||| |||||||||||||| |||||||    
T  38115998 tttagattgacttatttgagcttatctactgacgtaagtt 38116037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 330
Target Start/End: Complemental strand, 51190867 - 51190828
Alignment:
Q  291 gcttatagcttatacaaaaacaatttaaatttattttatc 330  Q
    ||||||| |||||||||||||||||||| |||||||||||    
T  51190867 gcttataacttatacaaaaacaatttaactttattttatc 51190828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 330
Target Start/End: Original strand, 836404 - 836442
Alignment:
Q  292 cttatagcttatacaaaaacaatttaaatttattttatc 330  Q
    ||||||||||||||||||||||||||  |||||||||||    
T  836404 cttatagcttatacaaaaacaatttagttttattttatc 836442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 352
Target Start/End: Complemental strand, 13810001 - 13809943
Alignment:
Q  294 tatagcttatacaaaaacaatttaaatttattttatcccatgctatagaaataatttat 352  Q
    |||||| |||||||||||||||||| |||||||||||   ||||| |||||||| ||||    
T  13810001 tatagcatatacaaaaacaatttaactttattttatcttttgctaaagaaataacttat 13809943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 331
Target Start/End: Original strand, 14576719 - 14576757
Alignment:
Q  293 ttatagcttatacaaaaacaatttaaatttattttatcc 331  Q
    ||||||| |||||||||||||||||| ||||||||||||    
T  14576719 ttatagcatatacaaaaacaatttaactttattttatcc 14576757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 330
Target Start/End: Complemental strand, 15477583 - 15477545
Alignment:
Q  292 cttatagcttatacaaaaacaatttaaatttattttatc 330  Q
    |||||||| |||||||||||||||||| |||||||||||    
T  15477583 cttatagcatatacaaaaacaatttaactttattttatc 15477545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 352
Target Start/End: Original strand, 37769699 - 37769785
Alignment:
Q  266 ttctgcaagacagtttttgaaaacggcttatagcttatacaaaaacaatttaaatttattttatcccatgctatagaaataatttat 352  Q
    ||||||||||||| || | |||||  ||| |||| || ||||||| ||||||| |||||||||||   ||||||| |||||||||||    
T  37769699 ttctgcaagacagcttataaaaacaacttgtagcataaacaaaaataatttaactttattttatcatttgctataaaaataatttat 37769785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 324
Target Start/End: Complemental strand, 46225820 - 46225762
Alignment:
Q  266 ttctgcaagacagtttttgaaaacggcttatagcttatacaaaaacaatttaaatttat 324  Q
    |||| ||||| ||||| ||||||||||||||| | |||||||||||||| ||| |||||    
T  46225820 ttcttcaagatagtttatgaaaacggcttataacatatacaaaaacaatctaattttat 46225762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 233
Target Start/End: Complemental strand, 6292647 - 6292610
Alignment:
Q  196 ggtttgtttagattgacttattttagcttatctactga 233  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  6292647 ggtttgtttggattgacttatttgagcttatctactga 6292610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 330
Target Start/End: Complemental strand, 34290268 - 34290203
Alignment:
Q  265 gttctgcaagacagtttttgaaaacggcttatagcttatacaaaaacaatttaaatttattttatc 330  Q
    ||||| ||||| || || ||||||| |||||||||||||||||||  || |||| |||||||||||    
T  34290268 gttcttcaagatagcttatgaaaacagcttatagcttatacaaaataaaattaactttattttatc 34290203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 6659836 - 6659800
Alignment:
Q  195 gggtttgtttagattgacttattttagcttatctact 231  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  6659836 gggttcgtttggattgacttattttagcttatctact 6659800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 32958788 - 32958756
Alignment:
Q  200 tgtttagattgacttattttagcttatctactg 232  Q
    ||||||||||||||||||| |||||||||||||    
T  32958788 tgtttagattgacttatttgagcttatctactg 32958756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 34619445 - 34619481
Alignment:
Q  294 tatagcttatacaaaaacaatttaaatttattttatc 330  Q
    |||||||||||||||||||||||||  ||||||||||    
T  34619445 tatagcttatacaaaaacaatttaaccttattttatc 34619481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 330
Target Start/End: Complemental strand, 37842001 - 37841965
Alignment:
Q  294 tatagcttatacaaaaacaatttaaatttattttatc 330  Q
    |||||||||||| |||||||||||| |||||||||||    
T  37842001 tatagcttatacgaaaacaatttaactttattttatc 37841965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 346
Target Start/End: Original strand, 30956664 - 30956745
Alignment:
Q  265 gttctgcaagacagtttttgaaaacggcttatagcttatacaaaaacaatttaaatttattttatcccatgctatagaaata 346  Q
    ||||| ||||| || ||||||||||  |||||||| |||||||||||||||||| |||||||||||   |||||||||||||    
T  30956664 gttctccaagatagcttttgaaaacaacttatagcctatacaaaaacaatttaactttattttatcttttgctatagaaata 30956745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 346
Target Start/End: Original strand, 30972476 - 30972557
Alignment:
Q  265 gttctgcaagacagtttttgaaaacggcttatagcttatacaaaaacaatttaaatttattttatcccatgctatagaaata 346  Q
    ||||| ||||| || ||||||||||  |||||||| |||||||||||||||||| |||||||||||   |||||||||||||    
T  30972476 gttctccaagatagcttttgaaaacaacttatagcctatacaaaaacaatttaactttattttatcttttgctatagaaata 30972557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 283 - 353
Target Start/End: Original strand, 32095247 - 32095317
Alignment:
Q  283 tgaaaacggcttatagcttatacaaaaacaatttaaatttattttatcccatgctatagaaataatttata 353  Q
    |||||||||||||||| ||||||||||||||||||| || ||||||||   || ||||||||||| |||||    
T  32095247 tgaaaacggcttatagtttatacaaaaacaatttaacttaattttatcttttgttatagaaataacttata 32095317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 351
Target Start/End: Original strand, 25447300 - 25447368
Alignment:
Q  283 tgaaaacggcttatagcttatacaaaaacaatttaaatttattttatcccatgctatagaaataattta 351  Q
    ||||||| | |||||||||||||||||||||||||| |||||||||||   | ||||||||||| ||||    
T  25447300 tgaaaacagtttatagcttatacaaaaacaatttaagtttattttatcttttactatagaaatagttta 25447368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 53046095 - 53046165
Alignment:
Q  17 acaaactacattcatcattcctataagcattacaaaacttaaaattgtgtttgttacttacaaaattgata 87  Q
    |||||| ||| ||||||||||||||||||| ||||||| || ||||| |||||||| | ||| ||||||||    
T  53046095 acaaacaacaatcatcattcctataagcatcacaaaacctataattgggtttgttagtaacacaattgata 53046165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 346
Target Start/End: Original strand, 44061079 - 44061142
Alignment:
Q  283 tgaaaacggcttatagcttatacaaaaacaatttaaatttattttatcccatgctatagaaata 346  Q
    |||||||  ||||||||||||| |||||||||||||  ||||||||||   |||||||||||||    
T  44061079 tgaaaacaacttatagcttatagaaaaacaatttaaccttattttatcttttgctatagaaata 44061142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 330
Target Start/End: Original strand, 24684888 - 24684926
Alignment:
Q  292 cttatagcttatacaaaaacaatttaaatttattttatc 330  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  24684888 cttatagcatatacaaaaacaattaaaatttattttatc 24684926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 346
Target Start/End: Original strand, 33405205 - 33405286
Alignment:
Q  265 gttctgcaagacagtttttgaaaacggcttatagcttatacaaaaacaatttaaatttattttatcccatgctatagaaata 346  Q
    ||||| ||||| || || ||||||| ||||||||||||||  ||||||| |||| ||||||||| |   |||||||||||||    
T  33405205 gttcttcaagatagcttatgaaaacagcttatagcttatatgaaaacaaattaactttattttaccttttgctatagaaata 33405286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 8007584 - 8007616
Alignment:
Q  199 ttgtttagattgacttattttagcttatctact 231  Q
    |||||| ||||||||||||||||||||||||||    
T  8007584 ttgtttggattgacttattttagcttatctact 8007616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 346
Target Start/End: Original strand, 34083581 - 34083644
Alignment:
Q  283 tgaaaacggcttatagcttatacaaaaacaatttaaatttattttatcccatgctatagaaata 346  Q
    ||||||| |||||||||||||||| ||||||||||| |||||||||||   |||||||||||||    
T  34083581 tgaaaacagcttatagcttatacacaaacaatttaactttattttatcttttgctatagaaata 34083644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 347
Target Start/End: Complemental strand, 30180063 - 30180001
Alignment:
Q  285 aaaacggcttatagcttatacaaaaacaatttaaatttattttatcccatgctatagaaataa 347  Q
    ||||| ||||||||||||||| |||||||||||| |||||||||||   |||||| |||||||    
T  30180063 aaaacagcttatagcttatacgaaaacaatttaactttattttatcttttgctatcgaaataa 30180001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 330
Target Start/End: Complemental strand, 12110392 - 12110327
Alignment:
Q  265 gttctgcaagacagtttttgaaaacggcttatagcttatacaaaaacaatttaaatttattttatc 330  Q
    ||||| ||||| || || ||||||| ||||||||||||||| |||||||||| | |||||||||||    
T  12110392 gttcttcaagatagcttatgaaaacagcttatagcttataccaaaacaatttgactttattttatc 12110327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 278 - 347
Target Start/End: Original strand, 22283795 - 22283863
Alignment:
Q  278 gtttttgaaaacggcttatagcttatacaaaaacaatttaaatttattttatcccatgctatagaaataa 347  Q
    |||| ||||||| | |||||||| ||||||||||||||||| |||||||||| |  ||||||||||||||    
T  22283795 gtttatgaaaacagtttatagctgatacaaaaacaatttaactttattttat-ctttgctatagaaataa 22283863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 328
Target Start/End: Complemental strand, 39907828 - 39907772
Alignment:
Q  272 aagacagtttttgaaaacggcttatagcttatacaaaaacaatttaaatttatttta 328  Q
    |||| ||||| ||||||| | ||||||||||||||||||||||||||  ||||||||    
T  39907828 aagatagtttatgaaaacagtttatagcttatacaaaaacaatttaaccttatttta 39907772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 324
Target Start/End: Original strand, 43694628 - 43694667
Alignment:
Q  285 aaaacggcttatagcttatacaaaaacaatttaaatttat 324  Q
    ||||| ||||||||| ||||||||||||||||||||||||    
T  43694628 aaaacagcttatagcatatacaaaaacaatttaaatttat 43694667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 324
Target Start/End: Original strand, 46280330 - 46280369
Alignment:
Q  285 aaaacggcttatagcttatacaaaaacaatttaaatttat 324  Q
    ||||| ||||||||| ||||||||||||||||||||||||    
T  46280330 aaaacagcttatagcatatacaaaaacaatttaaatttat 46280369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 241
Target Start/End: Original strand, 11782957 - 11783003
Alignment:
Q  195 gggtttgtttagattgacttattttagcttatctactgaagtaagtt 241  Q
    |||||||||| ||||||||||||| || ||||||||||| |||||||    
T  11782957 gggtttgtttggattgacttatttgagattatctactgatgtaagtt 11783003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 329
Target Start/End: Complemental strand, 13960921 - 13960884
Alignment:
Q  292 cttatagcttatacaaaaacaatttaaatttattttat 329  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  13960921 cttataggttatacaaaaacaatttaactttattttat 13960884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 327
Target Start/End: Complemental strand, 47177667 - 47177606
Alignment:
Q  266 ttctgcaagacagtttttgaaaacggcttatagcttatacaaaaacaatttaaatttatttt 327  Q
    |||| ||||| || |||||||||| ||||||||||||||  |||||||||||| ||| ||||    
T  47177667 ttctccaagatagcttttgaaaacagcttatagcttatatgaaaacaatttaactttgtttt 47177606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 3968277 - 3968321
Alignment:
Q  309 aacaatttaaatttattttatcccatgctatagaaataatttata 353  Q
    ||||||||||||||||||||||   |||||||||||||| |||||    
T  3968277 aacaatttaaatttattttatcttttgctatagaaataacttata 3968321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 17248561 - 17248525
Alignment:
Q  291 gcttatagcttatacaaaaacaatttaaatttatttt 327  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  17248561 gcttatagcttatacaaaaacaatttaactttttttt 17248525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 285 - 328
Target Start/End: Original strand, 34672834 - 34672878
Alignment:
Q  285 aaaacggcttatagcttatacaaaaacaatttaaa-tttatttta 328  Q
    |||||| |||||||||||||| ||||||||||||| |||||||||    
T  34672834 aaaacgacttatagcttatacgaaaacaatttaaactttatttta 34672878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 9093601 - 9093659
Alignment:
Q  272 aagacagtttttgaaaacggcttatagcttatacaaaaacaatttaaatttattttatc 330  Q
    ||||||| || ||||||| ||||||||||||||| |||||||||||| |||||||||||    
T  9093601 aagacagcttatgaaaacagcttatagcttatacgaaaacaatttaactttattttatc 9093659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 353
Target Start/End: Complemental strand, 507222 - 507164
Alignment:
Q  295 atagcttatacaaaaacaatttaaatttattttatcccatgctatagaaataatttata 353  Q
    |||||||||||||||||||| ||| |||||||||||   || |||||||||||||||||    
T  507222 atagcttatacaaaaacaatctaactttattttatcttttgttatagaaataatttata 507164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 353
Target Start/End: Original strand, 9559595 - 9559667
Alignment:
Q  281 tttgaaaacggcttatagcttatacaaaaacaatttaaatttattttatcccatgctatagaaataatttata 353  Q
    ||||||||| | || ||| || ||| ||||||||||||||||||||||||   |||||||||||||| |||||    
T  9559595 tttgaaaacagtttgtagtttctacgaaaacaatttaaatttattttatcttttgctatagaaataacttata 9559667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 330
Target Start/End: Complemental strand, 2735083 - 2735036
Alignment:
Q  283 tgaaaacggcttatagcttatacaaaaacaatttaaatttattttatc 330  Q
    ||||||| |||||||| ||||||||||| ||||||| |||||||||||    
T  2735083 tgaaaacagcttatagattatacaaaaataatttaactttattttatc 2735036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 330
Target Start/End: Original strand, 28621179 - 28621213
Alignment:
Q  296 tagcttatacaaaaacaatttaaatttattttatc 330  Q
    ||||||||||||||||||||||| |||||||||||    
T  28621179 tagcttatacaaaaacaatttaactttattttatc 28621213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 330
Target Start/End: Original strand, 3785758 - 3785803
Alignment:
Q  285 aaaacggcttatagcttatacaaaaacaatttaaatttattttatc 330  Q
    ||||| ||||||||||||||| |||||| ||||| |||||||||||    
T  3785758 aaaacagcttatagcttatacgaaaacagtttaactttattttatc 3785803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 327
Target Start/End: Original strand, 6909928 - 6909972
Alignment:
Q  283 tgaaaacggcttatagcttatacaaaaacaatttaaatttatttt 327  Q
    |||||||  |||||||| |||||||||||||||||| ||||||||    
T  6909928 tgaaaacaacttatagcatatacaaaaacaatttaactttatttt 6909972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 330
Target Start/End: Complemental strand, 12425603 - 12425538
Alignment:
Q  265 gttctgcaagacagtttttgaaaacggcttatagcttatacaaaaacaatttaaatttattttatc 330  Q
    ||||| ||||| || || ||||||| ||||||||||||||| |||||||||||| |||||||||||    
T  12425603 gttctccaagatagcttgtgaaaacagcttatagcttatacgaaaacaatttaactttattttatc 12425538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 330
Target Start/End: Complemental strand, 41819614 - 41819579
Alignment:
Q  295 atagcttatacaaaaacaatttaaatttattttatc 330  Q
    ||||||||||||||||||||||||||||||||||||    
T  41819614 atagcttatacaaaaacaatttaaatttattttatc 41819579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 346
Target Start/End: Original strand, 1465084 - 1465138
Alignment:
Q  292 cttatagcttatacaaaaacaatttaaatttattttatcccatgctatagaaata 346  Q
    ||||||||||| |||||| | |||||| |||||||||||| ||||||||||||||    
T  1465084 cttatagcttacacaaaagcgatttaactttattttatcctatgctatagaaata 1465138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 330
Target Start/End: Original strand, 18857444 - 18857503
Alignment:
Q  271 caagacagtttttgaaaacggcttatagcttatacaaaaacaatttaaatttattttatc 330  Q
    |||||||| || ||||||| |||||||| ||||| ||||||||||| | |||||||||||    
T  18857444 caagacagcttatgaaaacagcttatagattatagaaaaacaatttgactttattttatc 18857503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 330
Target Start/End: Complemental strand, 32372638 - 32372591
Alignment:
Q  283 tgaaaacggcttatagcttatacaaaaacaatttaaatttattttatc 330  Q
    ||||||| ||||||||| ||||||||||||||| || |||||||||||    
T  32372638 tgaaaacagcttatagcatatacaaaaacaattcaactttattttatc 32372591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 330
Target Start/End: Complemental strand, 465954 - 465921
Alignment:
Q  297 agcttatacaaaaacaatttaaatttattttatc 330  Q
    |||||||||||||||||||||| |||||||||||    
T  465954 agcttatacaaaaacaatttaactttattttatc 465921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 330
Target Start/End: Complemental strand, 35446059 - 35446022
Alignment:
Q  293 ttatagcttatacaaaaacaatttaaatttattttatc 330  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  35446059 ttatagcgtatacaaaaacaatttaactttattttatc 35446022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 330
Target Start/End: Original strand, 41981915 - 41981968
Alignment:
Q  277 agtttttgaaaacggcttatagcttatacaaaaacaatttaaatttattttatc 330  Q
    ||||| ||||||| |||||||| ||||||||||||| ||||  |||||||||||    
T  41981915 agtttatgaaaacagcttatagtttatacaaaaacattttagctttattttatc 41981968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 331
Target Start/End: Complemental strand, 42646934 - 42646881
Alignment:
Q  278 gtttttgaaaacggcttatagcttatacaaaaacaatttaaatttattttatcc 331  Q
    |||| |||||||  ||||||||||| ||||||||||||||| || |||||||||    
T  42646934 gtttatgaaaacaccttatagcttaaacaaaaacaatttaacttaattttatcc 42646881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 264
Target Start/End: Original strand, 3280655 - 3280719
Alignment:
Q  200 tgtttagattgacttattttagcttatctactgaagtaagttcttatgaaaacagtttataacat 264  Q
    ||||| ||||||||||||| | ||||||||||||  ||||  ||||||||||||| |||| ||||    
T  3280655 tgtttggattgacttatttaaacttatctactgatttaagcacttatgaaaacagcttatgacat 3280719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 42582760 - 42582796
Alignment:
Q  294 tatagcttatacaaaaacaatttaaatttattttatc 330  Q
    |||||| |||||||||| |||||||||||||||||||    
T  42582760 tatagcatatacaaaaataatttaaatttattttatc 42582796  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 330
Target Start/End: Original strand, 43199858 - 43199896
Alignment:
Q  292 cttatagcttatacaaaaacaatttaaatttattttatc 330  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  43199858 cttatagcttatacaaaaacaatttaactttattttatc 43199896  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 330
Target Start/End: Original strand, 12464511 - 12464576
Alignment:
Q  265 gttctgcaagacagtttttgaaaacggcttatagcttatacaaaaacaatttaaatttattttatc 330  Q
    ||||| ||||| || || ||||||  ||||||||| |||||||||||||||||| |||||||||||    
T  12464511 gttctccaagatagcttatgaaaatagcttatagcatatacaaaaacaatttaactttattttatc 12464576  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 330
Target Start/End: Original strand, 36114588 - 36114626
Alignment:
Q  292 cttatagcttatacaaaaacaatttaaatttattttatc 330  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  36114588 cttattgcttatacaaaaacaatttaactttattttatc 36114626  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 326
Target Start/End: Complemental strand, 18066160 - 18066099
Alignment:
Q  265 gttctgcaagacagtttttgaaaacggcttatagcttatacaaaaacaatttaaatttattt 326  Q
    ||||| ||||| || || ||||||| ||||||||||||||  |||||||||||| |||||||    
T  18066160 gttctccaagatagcttatgaaaacagcttatagcttatatgaaaacaatttaactttattt 18066099  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 318
Target Start/End: Complemental strand, 26626905 - 26626852
Alignment:
Q  265 gttctgcaagacagtttttgaaaacggcttatagcttatacaaaaacaatttaa 318  Q
    ||||||||||| || || ||||||| |||| |||||||||| ||||||||||||    
T  26626905 gttctgcaagatagcttatgaaaacagcttctagcttatacgaaaacaatttaa 26626852  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 285 - 353
Target Start/End: Complemental strand, 2416325 - 2416257
Alignment:
Q  285 aaaacggcttatagcttatacaaaaacaatttaaatttattttatcccatgctatagaaataatttata 353  Q
    ||||| ||||||||||||||  |||||||||||| || ||||||||   ||||| |||||||| |||||    
T  2416325 aaaacagcttatagcttatatcaaaacaatttaacttcattttatcttttgctacagaaataacttata 2416257  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 3611222 - 3611170
Alignment:
Q  301 tatacaaaaacaatttaaatttattttatcccatgctatagaaataatttata 353  Q
    |||||||||||||||||| ||||||||| |   |||||||||||||| |||||    
T  3611222 tatacaaaaacaatttaactttattttaccttttgctatagaaataacttata 3611170  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 330
Target Start/End: Complemental strand, 41851566 - 41851502
Alignment:
Q  266 ttctgcaagacagtttttgaaaacggcttatagcttatacaaaaacaatttaaatttattttatc 330  Q
    |||| ||||| || || |||||||  |||||||| |||||||||||||||||| |||||| ||||    
T  41851566 ttctccaagatagcttctgaaaacaacttatagcatatacaaaaacaatttaactttattgtatc 41851502  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 329
Target Start/End: Original strand, 44439426 - 44439462
Alignment:
Q  293 ttatagcttatacaaaaacaatttaaatttattttat 329  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  44439426 ttatagcttatacaaaaacagtttaactttattttat 44439462  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 330
Target Start/End: Complemental strand, 2482879 - 2482832
Alignment:
Q  283 tgaaaacggcttatagcttatacaaaaacaatttaaatttattttatc 330  Q
    ||||||| |||||||||||||||||||||| ||| | |||||||||||    
T  2482879 tgaaaacagcttatagcttatacaaaaacattttgactttattttatc 2482832  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 351
Target Start/End: Original strand, 10758321 - 10758380
Alignment:
Q  292 cttatagcttatacaaaaacaatttaaatttattttatcccatgctatagaaataattta 351  Q
    |||||||| |||||||||||||||||| ||||||||||    ||||||||||||| ||||    
T  10758321 cttatagcatatacaaaaacaatttaactttattttatgatttgctatagaaatagttta 10758380  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 346
Target Start/End: Complemental strand, 26771271 - 26771216
Alignment:
Q  291 gcttatagcttatacaaaaacaatttaaatttattttatcccatgctatagaaata 346  Q
    ||||||||| |||||||||||||||||| |||||||||| |  | |||||||||||    
T  26771271 gcttatagcatatacaaaaacaatttaagtttattttatgctttactatagaaata 26771216  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 346
Target Start/End: Complemental strand, 16734034 - 16733980
Alignment:
Q  292 cttatagcttatacaaaaacaatttaaatttattttatcccatgctatagaaata 346  Q
    |||||||| |||||||||||||||||| |||| ||||||   |||||||||||||    
T  16734034 cttatagcatatacaaaaacaatttaagtttagtttatcttttgctatagaaata 16733980  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 248
Target Start/End: Complemental strand, 4390356 - 4390316
Alignment:
Q  208 ttgacttattttagcttatctactgaagtaagttcttatga 248  Q
    ||||||||||||||||||||||||| | ||||| |||||||    
T  4390356 ttgacttattttagcttatctactggaataagtacttatga 4390316  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 329
Target Start/End: Original strand, 38036178 - 38036214
Alignment:
Q  293 ttatagcttatacaaaaacaatttaaatttattttat 329  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  38036178 ttatagcttacacaaaaacaatttgaatttattttat 38036214  T

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