View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11424_low_5 (Length: 320)
Name: NF11424_low_5
Description: NF11424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11424_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 30615786 - 30615601
Alignment:
| Q |
1 |
agaaaccaaaatgcttcaaacatcaaacaaggaagcataagatcggaaaaagtcagaaactttgaaaaaccaagcattaacaggtacattaactttacaa |
100 |
Q |
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| T |
30615786 |
agaaaccaaaatgcttcaaacatcaaacaaggaagcataagatcggaaaaagtcagaaactttgaaaagccaagcattaacaggtacattaactttacaa |
30615687 |
T |
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| Q |
101 |
ttagcagtgacccagttgagcattgactgtgaaattgagataagagagtgatagagataaaagggtcacagaaactaagagctaac |
186 |
Q |
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| T |
30615686 |
ttagcactgacccagttgagcattgactgtgaaattgagataagagagtgatagaaataaaagggtcacagaaactaagagctaac |
30615601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 65 - 186
Target Start/End: Complemental strand, 26720024 - 26719903
Alignment:
| Q |
65 |
aaaaaccaagcattaacaggtacattaactttacaattagcagtgacccagttgagcattgactgtgaaattgagataagagagtgatagagataaaagg |
164 |
Q |
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| T |
26720024 |
aaaagccaaacattaataggtacatgagttttaaaattagcagcgacccacttgagcattgacagtgaaattgagagaagagagtgatagagataaaatg |
26719925 |
T |
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| Q |
165 |
gtcacagaaactaagagctaac |
186 |
Q |
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||| || ||||||||||||||| |
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| T |
26719924 |
gtcgcaaaaactaagagctaac |
26719903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 231 - 305
Target Start/End: Complemental strand, 30615556 - 30615480
Alignment:
| Q |
231 |
ggaagagaacaacaatggtgtctgtctggaaagaggttgtcttagaga--gagatctaagagagagtgatggatttg |
305 |
Q |
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| T |
30615556 |
ggaagagaacaacaatggtgtctgtctggaaagaggttgtcttagagagagagatctaagagaaagtgatggatttg |
30615480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 299
Target Start/End: Complemental strand, 26719854 - 26719802
Alignment:
| Q |
245 |
atggtgtctgtctggaaagaggttgtcttagagagagatctaagagagagtgatg |
299 |
Q |
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| T |
26719854 |
atggtgtctgtctagaaagaagttgtcttaga--gagatctaagagagagtgatg |
26719802 |
T |
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