View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11424_low_7 (Length: 234)
Name: NF11424_low_7
Description: NF11424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11424_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 47334701 - 47334934
Alignment:
| Q |
1 |
aacaaaattgtatgatttaataaaacaaggattgcatacggtgtaagcaatcataaacccacaacaacaatt---------------accttctttacac |
85 |
Q |
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| T |
47334701 |
aacaaaattgtatgatttaatgaaacaaggattgcatacggtgtaagcaatcataaacctacaacaacaattactaactgtaaaattaccttctttacac |
47334800 |
T |
|
| Q |
86 |
cacgaatcttcttagctctattctttctctccttcatttgcttccttgacttctctacttttgtgtcaaggccattctgaaatagatttatattttggtt |
185 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47334801 |
cacgaatcttcttagctctattctttctctccttcatttgcttccttgacttctctacttttgtgtcaaggccattctgaaatagatttatattttggtt |
47334900 |
T |
|
| Q |
186 |
cagtccacaaaacaatgtaatcacggatattaat |
219 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
47334901 |
cagtccacaaaacaatgtaatcacggatattaat |
47334934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 171
Target Start/End: Complemental strand, 36223574 - 36223474
Alignment:
| Q |
71 |
ttaccttctttacaccacgaatcttcttagctctattctttctctccttcatttgcttccttgacttctctacttttgtgtcaaggccattctgaaatag |
170 |
Q |
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||||||||||||| ||||| |||||||| || | |||||||| ||||||||||||||||||||||| || || || || ||||| |||||||| ||||| |
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| T |
36223574 |
ttaccttctttactccacggatcttctttgcccggttctttctttccttcatttgcttccttgacttttcaaccttagtatcaagtccattctgcaatag |
36223475 |
T |
|
| Q |
171 |
a |
171 |
Q |
| |
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| |
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| T |
36223474 |
a |
36223474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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