View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11425_low_12 (Length: 260)
Name: NF11425_low_12
Description: NF11425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11425_low_12 |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0005 (1 HSPs) |
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| [»] scaffold0043 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 95 - 260
Target Start/End: Complemental strand, 14175607 - 14175442
Alignment:
| Q |
95 |
tcaacttcaaacgcactttccgagttcatcgctaatccaaaacacaggaaatttatatccaaatcgaagtaaattaagagtagaatctaaatgttaaata |
194 |
Q |
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||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| | ||||| |
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| T |
14175607 |
tcaacttcaaacggactttcagagttcatcgctaatccaaaacacatgaaatttatatccaaatcgaagtaaattaagcgtagaatctaaatatcaaata |
14175508 |
T |
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| Q |
195 |
atcacttaattttgatttacacagtaaaagacatgatccaaataacagtacctgaccaaacagctt |
260 |
Q |
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| T |
14175507 |
atcacttaattttgatttacacagtaaaagacatgacccaaataacagtacctgaccaaacagctt |
14175442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 14175750 - 14175678
Alignment:
| Q |
19 |
caaattcagtccaaccatcaatccaaactcttaccaattctaccaagtatataggttcagttctggagccattccatcaact |
100 |
Q |
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| T |
14175750 |
caaattcagtccaaccatcaatccaaactcttaccaa---------gtatataggttcagttctggagccattccatcaact |
14175678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 205
Target Start/End: Original strand, 11825559 - 11825668
Alignment:
| Q |
96 |
caacttcaaacgcactttccgagttcatcgctaatccaaaacacaggaaatttatatccaaatcgaagtaaattaagagtagaatctaaatgttaaataa |
195 |
Q |
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| T |
11825559 |
caacttcaaaagcactttccgagttcgtttctagtccgaatcacacaaaacttatattcgaattgaagggaattaagcgtagaatccaaatatccaataa |
11825658 |
T |
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| Q |
196 |
tcacttaatt |
205 |
Q |
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| T |
11825659 |
tcacttaatt |
11825668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 96 - 200
Target Start/End: Original strand, 38413 - 38517
Alignment:
| Q |
96 |
caacttcaaacgcactttccgagttcatcgctaatccaaaacacaggaaatttatatccaaatcgaagtaaattaagagtagaatctaaatgttaaataa |
195 |
Q |
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||||||||||||||||||||||||||||| |||||| ||| |||| |||||||| |||||| |||||||||||| |||||||| |||| || ||||| |
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| T |
38413 |
caacttcaaacgcactttccgagttcatcactaatcaaaatcacataaaatttatgtccaaactgaagtaaattaaacgtagaatccaaatattcaataa |
38512 |
T |
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| Q |
196 |
tcact |
200 |
Q |
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||||| |
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| T |
38513 |
tcact |
38517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 96 - 200
Target Start/End: Complemental strand, 14801314 - 14801210
Alignment:
| Q |
96 |
caacttcaaacgcactttccgagttcatcgctaatccaaaacacaggaaatttatatccaaatcgaagtaaattaagagtagaatctaaatgttaaataa |
195 |
Q |
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||||||||||||||||||||||||||||| |||||| ||| |||| |||||||| |||||| |||||||||||| |||||||| |||| || ||||| |
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| T |
14801314 |
caacttcaaacgcactttccgagttcatcactaatcaaaatcacataaaatttatgtccaaactgaagtaaattaaacgtagaatccaaatattcaataa |
14801215 |
T |
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| Q |
196 |
tcact |
200 |
Q |
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||||| |
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| T |
14801214 |
tcact |
14801210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 69126 - 69070
Alignment:
| Q |
126 |
ctaatccaaaacacaggaaatttatatccaaatcgaagtaaattaagagtagaatct |
182 |
Q |
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||||||||||||| | ||||||||||||||| ||||| ||||||| ||||||||| |
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| T |
69126 |
ctaatccaaaacatacaaaatttatatccaaactgaagtgaattaagtgtagaatct |
69070 |
T |
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