View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11425_low_3 (Length: 603)
Name: NF11425_low_3
Description: NF11425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11425_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 531; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 17 - 601
Target Start/End: Complemental strand, 13689169 - 13688588
Alignment:
| Q |
17 |
agttcaaaagtaaacagatacgaaacaatgcaagtagagaacatacaagattgagatttggtcaattgtgtctaaatcttcgattgcagattgattgcat |
116 |
Q |
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| T |
13689169 |
agttcaaaagtaaacagatacgaaacaatgcaagtagagaacatacgagattgagatttggtcaattgtgtctacatcttcgattgcagattgactgcat |
13689070 |
T |
|
| Q |
117 |
gggtacatcttgattatgtttacaaattaccaatttgtgtttatattttctgatgtgattgttccattcacacagtactataaatctatacacatttatg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13689069 |
gggtacatcttgattatgtttacaaattaccaatttgtgtttatattttctgatgtgattgttccattcacacagtactataaatctatacacatttatg |
13688970 |
T |
|
| Q |
217 |
tagttattaattttttcttttaatgacatatgatcttatattagttgtatagcttctttatcatggttttctaggctaaagttttgtcaatgttctctat |
316 |
Q |
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| T |
13688969 |
tagttattatttttttcttttaatgacatat---cttatattagttgtagagcttcattatcatggttttctaggctaaagttttgtcaatgttctctat |
13688873 |
T |
|
| Q |
317 |
ccagtttgaattggcagtatcagcattacaggaatccaaatcaaaattcacacatcaacactttgttaaccgacaatacttgttctccacctagaaatga |
416 |
Q |
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| T |
13688872 |
ccagtttgaattggcagtatcagcattacaggaatccaaatcaaaattcacacatcaacactttgttaaccgacaatacttgttctccacctagaaatgg |
13688773 |
T |
|
| Q |
417 |
tcattgcacgcctactttagctgtgcttcctgctgaaattgcagtatgaacttggtttttgtatttattttcatgttcattgataaaattgttattttcg |
516 |
Q |
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| T |
13688772 |
acattgcacgcctactttagctgtgcttcctgctgaaattgcagtatgaacttggtttttgtatttattttcatgttcattgataaaattgttattttcg |
13688673 |
T |
|
| Q |
517 |
gttgtatatatacattggattgttgcatttccacttattattacttaattttgtacagccatttccaccagtctctgctcctcct |
601 |
Q |
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| T |
13688672 |
gttgtatatatacattggattgttgcatttccacttattattacttaattttgtacagccatttccaccagtccctgctgctcct |
13688588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 460 - 587
Target Start/End: Complemental strand, 13633379 - 13633253
Alignment:
| Q |
460 |
gtatgaacttggtttttgtatttattttcatgttcattgataaaattgttattttcggttgtatatatacattggattgttgcatttccacttattatta |
559 |
Q |
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|||||||||| |||||| ||||| |||||||||||||||||||||| |||||| ||| | | ||||||||||||| ||||||||||| |||||||| |
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| T |
13633379 |
gtatgaacttagtttttctatttgttttcatgttcattgataaaataattatttcatgtttt-tctatacattggatttttgcatttccatttattattg |
13633281 |
T |
|
| Q |
560 |
cttaattttgtacagccatttccaccag |
587 |
Q |
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| T |
13633280 |
cttaattttgtgcagccacttcccccag |
13633253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 460 - 594
Target Start/End: Original strand, 27533776 - 27533906
Alignment:
| Q |
460 |
gtatgaacttggtttttgtatttattttcatgttcattgataaaattgttattttcggttgtatatatacattggattgttgcatttccacttattatta |
559 |
Q |
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| T |
27533776 |
gtatgaacttagttttgctatttgttttcatgttcatcaataaaataattatttcatgttgtttat----attggattgttgcatatccacttattatta |
27533871 |
T |
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| Q |
560 |
cttaattttgtacagccatttccaccagtctctgc |
594 |
Q |
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||||||||||| |||||| |||| |||| |||||| |
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| T |
27533872 |
cttaattttgtgcagccacttcccccagcctctgc |
27533906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 13642780 - 13642730
Alignment:
| Q |
140 |
aaattaccaatttgtgtttatattttctgatgtgattgttccattcacaca |
190 |
Q |
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| T |
13642780 |
aaattacaactttgtgtttaaattttctaatgtgattgttccattcacaca |
13642730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 337
Target Start/End: Original strand, 27533632 - 27533671
Alignment:
| Q |
298 |
ttttgtcaatgttctctatccagtttgaattggcagtatc |
337 |
Q |
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| T |
27533632 |
ttttgtaaatgttttctatccagtttgaattggcagtatc |
27533671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 13633544 - 13633504
Alignment:
| Q |
298 |
ttttgtcaatgttctctatccagtttgaattggcagtatca |
338 |
Q |
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| T |
13633544 |
ttttgtaaatgttttctatccagtttgaattggcagcatca |
13633504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 33717214 - 33717264
Alignment:
| Q |
17 |
agttcaaaagtaaacagatacgaaacaatgcaagtagagaacatacaagatt |
68 |
Q |
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| T |
33717214 |
agttcaaaagtaaacagatacgaaa-aatgcaaacagagaacacacaagatt |
33717264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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