View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11425_low_7 (Length: 356)
Name: NF11425_low_7
Description: NF11425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11425_low_7 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 11 - 356
Target Start/End: Complemental strand, 28859969 - 28859625
Alignment:
| Q |
11 |
cataggatacaaagattcttattaggtgaggtacaaaaataaatacattaattaagataaagaaaaaccatgaagacaagcacaaatgttctataaatcc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28859969 |
cataggatacaaagattcttattaggtgaggtacaaaaataaatacattaattaagataaagaaaaaccatgaagacaagcacaaatgttctataaatcc |
28859870 |
T |
|
| Q |
111 |
agttgtatgatattcgatcagagacaacaatccagggcacaacaacaacataatccagcacaactgcaaaaagaaataaatatacaaaacaaaagtcaga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
28859869 |
agttgtatgatattcgatcagagacaacaatccagggcacaacaacaacataatccagcacaactgcaaaaagaaaaatatatacaaaacaaaagtcaga |
28859770 |
T |
|
| Q |
211 |
tatatttatactaaacaatgtttggaatacaannnnnnnnnnnntcatagacga----aaaactataaaaataaatctttaatttaatcactgattttat |
306 |
Q |
| |
|
||||||||||||||| |||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28859769 |
tatatttatactaaaaaatgtttggactacaa----atatatattcatagacgaaattaaaactataaaaataaatctttaatttaatcactgattttat |
28859674 |
T |
|
| Q |
307 |
tactataattaccacagtgttacatatatcaaaaatctaagttcaacttc |
356 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
28859673 |
tactataattactacagtgttacatatatc-aaaatctaagctcaacttc |
28859625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University