View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11425_low_9 (Length: 339)
Name: NF11425_low_9
Description: NF11425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11425_low_9 |
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| [»] chr2 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 28862458 - 28862781
Alignment:
| Q |
1 |
tcataaagtctcaaatacaaggtaaacaaaaaacacccatcaaattcaaatggacaaataaatacataatgtccaaagagatnnnnnnntccttattcat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
28862458 |
tcataaagtctcaaatacaaggtaaacaaaaaacacccatcaaat------ggacaaataaatacataatgtccaaagagat--------cctgattcat |
28862543 |
T |
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| Q |
101 |
ctacaaactacaaagaatacaataggaaacagctgggatnnnnnnnnctgtggtaacaataatctatggtataaaataatccaatcttaacttaaaagca |
200 |
Q |
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| T |
28862544 |
ctacaaactacaaagaatacaataggaaacaactgggataaaaaaa-ctgtggtaacaataatctatggtataaaataatccaatcataacttaaaagca |
28862642 |
T |
|
| Q |
201 |
tatatcaagggcacagcagcaacatatagcagcacaacatcccttccagaaaccatcacccttgctagtagtttggtctgaaatcttttgttgagggtac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28862643 |
tatatcaagggcacagcagcaacatatagcagcacaacatcccttccagaaaccatcacccctgctagtagtttggtctgaaatcttttgttgagggtac |
28862742 |
T |
|
| Q |
301 |
ccttgagagccatccttggaaggataacccataggtggt |
339 |
Q |
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| T |
28862743 |
ccttgagagccatccttggaaggataacccataggtggt |
28862781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 15 - 339
Target Start/End: Complemental strand, 28865772 - 28865462
Alignment:
| Q |
15 |
atacaaggtaaacaaaaaacacccatcaaattcaaatggacaaataaatacataatgtccaaagagatnnnnnnntccttattcatctacaaactacaaa |
114 |
Q |
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| T |
28865772 |
atacaagggaaacaaataacatccatcaaatagaaa-----aaataaatacataatgtccaaagagat--------cctgattcatctacaaactacaaa |
28865686 |
T |
|
| Q |
115 |
gaatacaataggaaacagctgggatnnnnnnnnctgtggtaacaataatctatggtataaaataatccaatcttaacttaaaagcatatatcaagggcac |
214 |
Q |
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| T |
28865685 |
gaatacaataggaaacaactgggataaaaaaa-ctgtggtaacaataatctatggtataaaataatccaatcataacttaaaagcatatatcaagggcac |
28865587 |
T |
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| Q |
215 |
agcagcaacatatagcagcacaacatcccttccagaaaccatcacccttgctagtagtttggtctgaaatcttttgttgagggtacccttgagagccatc |
314 |
Q |
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| T |
28865586 |
agcagcaacatatagcagcacaacatcccttccagaaaccatcacccctgctagtagtttggtctgaaatcttttgttgagggtacccttgagagccatc |
28865487 |
T |
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| Q |
315 |
cttggaaggataacccataggtggt |
339 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
28865486 |
cttggaaggataacccataggtggt |
28865462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 189 - 339
Target Start/End: Complemental strand, 36059640 - 36059490
Alignment:
| Q |
189 |
aacttaaaagcatatatcaagggcacagcagcaacatatagcagcacaacatcccttccagaaaccatcacccttgctagtagtttggtctgaaatcttt |
288 |
Q |
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|||||||||||| |||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||| ||||||| |||||||||| |||| || |
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| T |
36059640 |
aacttaaaagcagatatcaagggcacaacagcaacatagagcagcacaacatcctttccagaaaccatcacccctgctagtggtttggtctggaatcctt |
36059541 |
T |
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| Q |
289 |
tgttgagggtacccttgagagccatccttggaaggataacccataggtggt |
339 |
Q |
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||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36059540 |
tgttgggggtaccctgcagagccatccttggaaggataacccataggtggt |
36059490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 190 - 304
Target Start/End: Complemental strand, 15099648 - 15099534
Alignment:
| Q |
190 |
acttaaaagcatatatcaagggcacagcagcaacatatagcagcacaacatcccttccagaaaccatcacccttgctagtagtttggtctgaaatctttt |
289 |
Q |
| |
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||||||||||| ||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||| || |||| |||||||||| |||| ||| |
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| T |
15099648 |
acttaaaagcaaatatcaatggcacagcaacaacatagagcagcacaacatcccttccagaaaccatcacctctggtagtggtttggtctggaatccttt |
15099549 |
T |
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| Q |
290 |
gttgagggtaccctt |
304 |
Q |
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| | |||||| |||| |
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| T |
15099548 |
ggttagggtatcctt |
15099534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 190 - 304
Target Start/End: Complemental strand, 15110883 - 15110769
Alignment:
| Q |
190 |
acttaaaagcatatatcaagggcacagcagcaacatatagcagcacaacatcccttccagaaaccatcacccttgctagtagtttggtctgaaatctttt |
289 |
Q |
| |
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||||||||||| ||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||| || |||| ||||||||| |||| ||| |
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| T |
15110883 |
acttaaaagcaaatatcaatggcacagcaacaacatagagcagcacaacatcccttccagaaaccatcacctctggtagtgctttggtctggaatccttt |
15110784 |
T |
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| Q |
290 |
gttgagggtaccctt |
304 |
Q |
| |
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| | |||||| |||| |
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| T |
15110783 |
ggttagggtatcctt |
15110769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 190 - 304
Target Start/End: Original strand, 18616801 - 18616915
Alignment:
| Q |
190 |
acttaaaagcatatatcaagggcacagcagcaacatatagcagcacaacatcccttccagaaaccatcacccttgctagtagtttggtctgaaatctttt |
289 |
Q |
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||||||||||| ||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||| || |||| ||||||||| |||| ||| |
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| T |
18616801 |
acttaaaagcaaatatcaatggcacagcaacaacatagagcagcacaacatcccttccagaaaccatcacctctggtagtgctttggtctggaatccttt |
18616900 |
T |
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| Q |
290 |
gttgagggtaccctt |
304 |
Q |
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| T |
18616901 |
ggttagggtatcctt |
18616915 |
T |
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