View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11426_high_1 (Length: 930)
Name: NF11426_high_1
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11426_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 19 - 522
Target Start/End: Original strand, 5396034 - 5396537
Alignment:
| Q |
19 |
gccattaggataacgaaaacaatgagtgagtaaggatgccataaaaggctcagaaacaaaatcaaaagcatcaccatagtgtagttcatgcggaagtatg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5396034 |
gccattaggataacgaaaacaatgagtgagtaaggatgccataaaaggctcagaaacaaaatcaaaagcatcaccatagtgtagttcatgcggaagtatg |
5396133 |
T |
|
| Q |
119 |
agatgttgacacgaacacgtgaaattgcttccggtacaccagtggggatgccgagtgaccggatatcaaacatggttttccacggtcgacgagttcctaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5396134 |
agatgttgacacgaacacgtgaaattgcttccggtacaccagtggggatgccgagtgaccggatatcgaacatggttttccacggtcgacgagttcctaa |
5396233 |
T |
|
| Q |
219 |
gccggccttgatccgttgtttgccacgtgttatgtattcaagttttggtggtgttggtgaggttgggattgtgccgtaggttgatgtcatggtggtggaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5396234 |
gccggccttgatccgttgtttgccacgtgttatgtattcaagttttggtggtgttggtgaggttgggattgtgccgtaggttgatgtcatggtggtggaa |
5396333 |
T |
|
| Q |
319 |
acaaccaatgcaaaaattgtaatgtaattgcaatttggaacgaacaatataatgaaatggttactacttattagagtttaataattataggagcaattgg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5396334 |
acaaccaatgcaaaaattgtaatgtaattgcaatttggaacgaacaatataatgaaatggttactacttattagagtttaataattataggagcaattgg |
5396433 |
T |
|
| Q |
419 |
gtcctacgattttgtgagtttgtttatgcnnnnnnnnnnnnnnnnnaacatatgagtgagtgtattattatggtttggaaggatgggatgtggatatggt |
518 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5396434 |
gtcctacgattttgtgagtttgtttatgctttttatttttatttttaacatatgagtgagtgtattattatggtttggaaggatgggatgtggatatggt |
5396533 |
T |
|
| Q |
519 |
aata |
522 |
Q |
| |
|
|||| |
|
|
| T |
5396534 |
aata |
5396537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 572 - 930
Target Start/End: Original strand, 5396587 - 5396941
Alignment:
| Q |
572 |
tgagttagataggtagatgtttgatatgtttgtttccaaacgagtgaagacattcatagtataagtttttgttctcgaatttggaaggtggttggtgttg |
671 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5396587 |
tgagttagataggtagatgtttgatatgtttgtttccaaacgagtgaagacattcatagtataagtttttgttctcgaatttggaaggtggttggtgttg |
5396686 |
T |
|
| Q |
672 |
ctttcttccttggttgtaatgttgaacctatttcatgagaggagaaaactcttgcacttcaatagttagttagttacttggttaatcatnnnnnnntttg |
771 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||| |||||||| |||| |
|
|
| T |
5396687 |
ctttcttccttggttgtaatgttgaacctatttcatgagagaagaaaactcttgcacttcaa----tatttagttacttagttaatcagaaaaaaatttg |
5396782 |
T |
|
| Q |
772 |
atgtgtttttgttgagttttccttacacaagctttggccatgtgagcgattttttccaattcaaatctttctatttaagatttagtccaacgcaacccac |
871 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
5396783 |
atgtgtttttgttgagttttccttacacaagctttggccatgtgagtgattttttccaattcaaatctttctatttaagatttggtccgacgcaacccac |
5396882 |
T |
|
| Q |
872 |
ttggactgtccttttagggttggcttgaaagtttgcgctcctcttaaggatttaggttc |
930 |
Q |
| |
|
|||||||| |||||||| |||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
5396883 |
ttggactggccttttagcgttggcttgaaaatttgcgctcctcttaaagatttaggttc |
5396941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University