View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11426_high_11 (Length: 470)
Name: NF11426_high_11
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11426_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 50275904 - 50275452
Alignment:
| Q |
1 |
gctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccgaacttctcaaggtga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50275904 |
gctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccgaacttctcaaggtga |
50275805 |
T |
|
| Q |
101 |
ttttgttcgaaaatattattacaattcttgatggaagccgtggataagagaaaagtttagatagtaaaatagaaatgatatttagaatgaataagcggtt |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
50275804 |
ttttgtttgaaaatattattacaattcttgatggaagccgtggataagagaaaagtttagatagtaaaatagaaatgatatttagaatgaataagcgatt |
50275705 |
T |
|
| Q |
201 |
acatcaagactttat----agaggctaaaaacaaactaccactagtaattaactaacaaatatatacattttgttaactcttacttctttctttgcattt |
296 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50275704 |
acatcaagactttatttatagaggctaaaaacaaactaccactagtaattaactaacaaatatatacattttgttaactcttacttctttctttgcattt |
50275605 |
T |
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| Q |
297 |
gttttttcctcttgagattcagataattagaaaccacctcgaggcgttaacggatcagcaattgatggcgatcttcaatctgcagcattcttgtcaacag |
396 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50275604 |
gtattttcctcttgagattcagataattagaaaccacctcgaggcgttaacggatcagcaattgatggcgatcttcaatctgcagcattcttgtcaacag |
50275505 |
T |
|
| Q |
397 |
gctgaagatgcattatctcaaggcatggaagctttgcaacaatctctttcaga |
449 |
Q |
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| T |
50275504 |
gctgaagatgcattatctcaaggaatggaaggtttgcaacaatctctttcaga |
50275452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 50279928 - 50279476
Alignment:
| Q |
1 |
gctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccgaacttctcaaggtga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50279928 |
gctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccgaacttctcaaggtga |
50279829 |
T |
|
| Q |
101 |
ttttgttcgaaaatattattacaattcttgatggaagccgtggataagagaaaagtttagatagtaaaatagaaatgatatttagaatgaataagcggtt |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
50279828 |
ttttgtttgaaaatattattacaattcttgatggaagccgtggataagagaaaagtttagatagtaaaatagaaatgatatttagaatgaataagcgatt |
50279729 |
T |
|
| Q |
201 |
acatcaagactttat----agaggctaaaaacaaactaccactagtaattaactaacaaatatatacattttgttaactcttacttctttctttgcattt |
296 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50279728 |
acatcaagactttatttatagaggctaaaaacaaactaccactagtaattaactaacaaatatatacattttgttaactcttacttctttctttgcattt |
50279629 |
T |
|
| Q |
297 |
gttttttcctcttgagattcagataattagaaaccacctcgaggcgttaacggatcagcaattgatggcgatcttcaatctgcagcattcttgtcaacag |
396 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50279628 |
gtattttcctcttgagattcagataattagaaaccacctcgaggcgttaacggatcagcaattgatggcgatcttcaatctgcagcattcttgtcaacag |
50279529 |
T |
|
| Q |
397 |
gctgaagatgcattatctcaaggcatggaagctttgcaacaatctctttcaga |
449 |
Q |
| |
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||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
50279528 |
gctgaagatgcattatctcaaggaatggaaggtttgcaacaatctctttcaga |
50279476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 14462579 - 14462668
Alignment:
| Q |
1 |
gctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccgaactt |
90 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14462579 |
gctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccgaactt |
14462668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 22610185 - 22610283
Alignment:
| Q |
2 |
ctgatgtatttcacatactttctgggttgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccgaacttctcaaggtga |
100 |
Q |
| |
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|||||||||||||||| || | |||||||||||||||||| | |||||||| ||| || |||| ||||| ||| |||||||| ||| |||||||||||| |
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| T |
22610185 |
ctgatgtatttcacatgctctatgggttgtggaagacaccagtagaaagattttttatttggcatggtgcatttcgttcatctgaaattctcaaggtga |
22610283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 445
Target Start/End: Original strand, 22610624 - 22610675
Alignment:
| Q |
394 |
caggctgaagatgcattatctcaaggcatggaagctttgcaacaatctcttt |
445 |
Q |
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|||||||| ||||| |||||||| ||||||||||| ||| |||||||||||| |
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| T |
22610624 |
caggctgaggatgctttatctcacggcatggaagcattgaaacaatctcttt |
22610675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 100
Target Start/End: Original strand, 14931420 - 14931491
Alignment:
| Q |
29 |
tgtggaagacacctgcagaaagatgtttcatgtggcttggtggattccgttcatccgaacttctcaaggtga |
100 |
Q |
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||||||| |||||||| ||||| |||||| | ||||||||||| || || || || |||||||||||||||| |
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| T |
14931420 |
tgtggaaaacacctgctgaaaggtgtttcttatggcttggtggttttcggtcgtctgaacttctcaaggtga |
14931491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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