View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11426_high_15 (Length: 456)

Name: NF11426_high_15
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11426_high_15
NF11426_high_15
[»] chr7 (24 HSPs)
chr7 (18-176)||(21786056-21786214)
chr7 (18-180)||(21714731-21714893)
chr7 (294-437)||(21786332-21786474)
chr7 (18-166)||(21788774-21788922)
chr7 (86-180)||(21772551-21772645)
chr7 (84-180)||(21726432-21726528)
chr7 (21-152)||(15714168-15714305)
chr7 (58-166)||(21664683-21664791)
chr7 (59-165)||(21705199-21705305)
chr7 (21-152)||(21647401-21647538)
chr7 (51-150)||(21764601-21764703)
chr7 (50-166)||(21792549-21792665)
chr7 (109-180)||(21682241-21682312)
chr7 (51-166)||(21629534-21629655)
chr7 (51-166)||(21652732-21652853)
chr7 (22-62)||(21772513-21772553)
chr7 (351-437)||(21726695-21726792)
chr7 (55-132)||(21807657-21807734)
chr7 (401-437)||(21727263-21727299)
chr7 (398-437)||(21682680-21682719)
chr7 (50-151)||(21657010-21657114)
chr7 (351-437)||(21772815-21772911)
chr7 (51-171)||(21746077-21746200)
chr7 (397-437)||(21716734-21716773)
[»] scaffold0182 (1 HSPs)
scaffold0182 (18-80)||(25906-25968)


Alignment Details
Target: chr7 (Bit Score: 151; Significance: 1e-79; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 21786056 - 21786214
Alignment:
Q  18 cagagaaggagaaggacatggttccaaaaagaaaaggagaaggagaacatagtttatcaatacgaaatgagtcacagttagagacaccctttcatcttct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21786056 cagagaaggagaaggacatggttccaaaaagaaaaggagaaggagaacatagtttatcaatacgaaatgagtcacagttagagacaccctttcatcttct 21786155  T
Q  118 tgatcttcagcgtaatatcatcctcattacatctataaccaaggtacaacacaaatatt 176  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  21786156 tgatcttcagcgtaatatcatcctcattacatctacaaccaaggtacaacagaaatatt 21786214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 21714731 - 21714893
Alignment:
Q  18 cagagaaggagaaggacatggttccaaaaagaaaaggagaaggagaacatagtttatcaatacgaaatgagtcacagttagagacaccctttcatcttct 117  Q
    |||||||| ||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21714731 cagagaagaagaaggacatggttccaaaaagaaaagcagaaagagagcatagtttatcaatacgaaatgagtcacagttagagacaccctttcatcttct 21714830  T
Q  118 tgatcttcagcgtaatatcatcctcattacatctataaccaaggtacaacacaaatattagag 180  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  21714831 tgatcttcaacgtaatatcatcctcattacatctacaaccaaggtacaacagaaatattagag 21714893  T

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Target: chr7; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 294 - 437
Target Start/End: Original strand, 21786332 - 21786474
Alignment:
Q  294 attagtttaagtttacctatcattaattatcactatttcaacttttattagtttaagcataatttctatttgtggtatactaacatgtgcccttagtgcg 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |    
T  21786332 attagtttaagtttacctatcattaattatcactatttcaacttttattagtttaagcataatttatatttgtggtatactaacatgtgcccttagtttg 21786431  T
Q  394 tactttccatattttaattacaaggtggaggatagtgattagag 437  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||    
T  21786432 tactttccatattttaattacaaagtgga-gatagtgattagag 21786474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 21788774 - 21788922
Alignment:
Q  18 cagagaaggagaaggacatggttccaaaaagaaaaggagaaggagaacatagtttatcaatacgaaatgagtcacagttagagacaccctttcatcttct 117  Q
    |||| |||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||  ||||||||| |||||||||||||||  |||||||||    
T  21788774 cagataaggagaaggacatggttccaaaaggaaagggagaaggagaacatagtgtatcaataacaaatgagtcccagttagagacacccactcatcttct 21788873  T
Q  118 tgatcttcagcgtaatatcatcctcattacatctataaccaaggtacaa 166  Q
    ||||||||||||||| |||||||||| ||||||||   |||||||||||    
T  21788874 tgatcttcagcgtaaaatcatcctcactacatctaattccaaggtacaa 21788922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 86 - 180
Target Start/End: Original strand, 21772551 - 21772645
Alignment:
Q  86 gagtcacagttagagacaccctttcatcttcttgatcttcagcgtaatatcatcctcattacatctataaccaaggtacaacacaaatattagag 180  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||    
T  21772551 gagtcacagtcagagacaccctttcatcttcttgatcttcagcgtaataccatcctcattacatctacaaccaaggtacaacaaaaatattagag 21772645  T

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Target: chr7; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 84 - 180
Target Start/End: Original strand, 21726432 - 21726528
Alignment:
Q  84 atgagtcacagttagagacaccctttcatcttcttgatcttcagcgtaatatcatcctcattacatctataaccaaggtacaacacaaatattagag 180  Q
    ||||||| |||| | |||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  21726432 atgagtcccagtcaaagacaccctttcatcttcttgatcgtcggcgtaatatcatcctcattacatctacaaccaaggtacaacagaaatattagag 21726528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 15714168 - 15714305
Alignment:
Q  21 agaaggagaaggacatggttccaaaaagaaaaggagaaggagaacatagtttatcaatac------gaaatgagtcacagttagagacaccctttcatct 114  Q
    ||||||||||| ||  ||||||||| ||||||||||||||| || ||||| |||||||||      ||||||||||||||| ||||||||||  ||||||    
T  15714168 agaaggagaagaacggggttccaaacagaaaaggagaaggacaatatagtgtatcaataccattacgaaatgagtcacagtcagagacacccactcatct 15714267  T
Q  115 tcttgatcttcagcgt-aatatcatcctcattacatcta 152  Q
    ||||||||| |||||| ||||| ||||||||||||||||    
T  15714268 tcttgatctacagcgtaaatat-atcctcattacatcta 15714305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 58 - 166
Target Start/End: Original strand, 21664683 - 21664791
Alignment:
Q  58 aggagaacatagtttatcaatacgaaatgagtcacagttagagacaccctttcatcttcttgatcttcagcgtaatatcatcctcattacatctataacc 157  Q
    ||||||||||| | ||||||||| ||||||||||||| | |||||||||  ||||||||||||||||| |||||| |||| |||||||  ||||| | ||    
T  21664683 aggagaacatattgtatcaatactaaatgagtcacagctggagacacccactcatcttcttgatcttctgcgtaaaatcaccctcattggatctaaaccc 21664782  T
Q  158 aaggtacaa 166  Q
    |||||||||    
T  21664783 aaggtacaa 21664791  T

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Target: chr7; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 59 - 165
Target Start/End: Original strand, 21705199 - 21705305
Alignment:
Q  59 ggagaacatagtttatcaatacgaaatgagtcacagttagagacaccctttcatcttcttgatcttcagcgtaatatcatcctcattacatctataacca 158  Q
    |||||||||||| ||||||||| |||||||||||||| ||| ||||||   ||||||||||||||||| ||||| ||||||||||  |||||||   |||    
T  21705199 ggagaacatagtgtatcaataccaaatgagtcacagtcagaaacacccacacatcttcttgatcttcaacgtaaaatcatcctcaccacatctaattcca 21705298  T
Q  159 aggtaca 165  Q
    |||||||    
T  21705299 aggtaca 21705305  T

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Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 21647401 - 21647538
Alignment:
Q  21 agaaggagaaggacatggttccaaaaagaaaaggagaaggagaacatagtttatcaa------tacgaaatgagtcacagttagagacaccctttcatct 114  Q
    ||||||||||||| |||||| ||||| ||||||||||||||||||| ||| ||||||      ||| || |||||| || | ||||||||||  ||||||    
T  21647401 agaaggagaaggaaatggtttcaaaaggaaaaggagaaggagaacacagtgtatcaataccattaccaagtgagtcccaatcagagacacccactcatct 21647500  T
Q  115 tcttgatcttcagcgtaatatcatcctcattacatcta 152  Q
    | ||||||||||||||||  ||||||||| | ||||||    
T  21647501 ttttgatcttcagcgtaaactcatcctcaatccatcta 21647538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 51 - 150
Target Start/End: Original strand, 21764601 - 21764703
Alignment:
Q  51 aaggagaaggagaacatagtttatcaatacgaa---atgagtcacagttagagacaccctttcatcttcttgatcttcagcgtaatatcatcctcattac 147  Q
    |||||||||||||||||||| ||||||||  ||   |||||||||||| ||||||||||  ||||||||| |||||||||| |||  ||||||||| |||    
T  21764601 aaggagaaggagaacatagtgtatcaataataacaaatgagtcacagtcagagacacccactcatcttctagatcttcagcataaagtcatcctcactac 21764700  T
Q  148 atc 150  Q
    |||    
T  21764701 atc 21764703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 166
Target Start/End: Original strand, 21792549 - 21792665
Alignment:
Q  50 aaaggagaaggagaacatagtttatcaatacgaaatgagtcacagttagagacaccctttcatcttcttgatcttcagcgtaatatcatcctcattacat 149  Q
    |||||||||||| |||||||| ||||||| | | ||||||||| ||||||| |||||  ||||||||||||||| || ||||| || ||||||| | |||    
T  21792549 aaaggagaaggacaacatagtgtatcaatgccagatgagtcactgttagagccacccaatcatcttcttgatctgcatcgtaaaatgatcctcactgcat 21792648  T
Q  150 ctataaccaaggtacaa 166  Q
    |||   |||||||||||    
T  21792649 ctaattccaaggtacaa 21792665  T

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Target: chr7; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 109 - 180
Target Start/End: Original strand, 21682241 - 21682312
Alignment:
Q  109 tcatcttcttgatcttcagcgtaatatcatcctcattacatctataaccaaggtacaacacaaatattagag 180  Q
    |||||||||||||||||||||||||||||||||||||| ||||| | |||||||| || | |||| ||||||    
T  21682241 tcatcttcttgatcttcagcgtaatatcatcctcattaaatctacacccaaggtataatagaaatcttagag 21682312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 51 - 166
Target Start/End: Original strand, 21629534 - 21629655
Alignment:
Q  51 aaggagaaggagaacatagtttatcaatacga------aatgagtcacagttagagacaccctttcatcttcttgatcttcagcgtaatatcatcctcat 144  Q
    ||||||||||||||||||||  |||||||| |      ||||||||||||||||||| |||   |||||||||||||||||| || ||  |||||||||     
T  21629534 aaggagaaggagaacatagtgcatcaataccagtaccaaatgagtcacagttagagaaaccaactcatcttcttgatcttcaacgcaaagtcatcctcac 21629633  T
Q  145 tacatctataaccaaggtacaa 166  Q
    ||||||||   |||||||||||    
T  21629634 tacatctaattccaaggtacaa 21629655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 51 - 166
Target Start/End: Original strand, 21652732 - 21652853
Alignment:
Q  51 aaggagaaggagaacatagtttatcaatacg------aaatgagtcacagttagagacaccctttcatcttcttgatcttcagcgtaatatcatcctcat 144  Q
    |||||||||||||||||||| |||| ||||       |||||||||||||| | ||||||||  ||||||||||||||||| || ||| |||||||| |     
T  21652732 aaggagaaggagaacatagtgtatcgataccttaaccaaatgagtcacagtcaaagacacccactcatcttcttgatcttctgcataaaatcatcctaac 21652831  T
Q  145 tacatctataaccaaggtacaa 166  Q
    ||||||||   |||||||||||    
T  21652832 tacatctaattccaaggtacaa 21652853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 21772513 - 21772553
Alignment:
Q  22 gaaggagaaggacatggttccaaaaagaaaaggagaaggag 62  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  21772513 gaagaagaaggacatggttccaaaaagaaaaggagaaggag 21772553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 437
Target Start/End: Original strand, 21726695 - 21726792
Alignment:
Q  351 cataatttctatttgtggtatacta---acatgtgcccttagtgc--------gtactttccatattttaattacaaggtggaggatagtgattagag 437  Q
    |||||||||||||| ||||||| ||   |||||||||||||||||        ||| ||| |||||||||||||||| ||||||||||||||||||||    
T  21726695 cataatttctatttttggtatattatgaacatgtgcccttagtgcacatgttagtatttttcatattttaattacaaagtggaggatagtgattagag 21726792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 21807734 - 21807657
Alignment:
Q  55 agaaggagaacatagtttatcaatacgaaatgagtcacagttagagacaccctttcatcttcttgatcttcagcgtaa 132  Q
    ||||| |||||||||| ||||||||  ||||||||  |||| |||||||||   ||||||||||||| ||||||||||    
T  21807734 agaagaagaacatagtgtatcaataacaaatgagtggcagtcagagacaccaactcatcttcttgatgttcagcgtaa 21807657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 437
Target Start/End: Original strand, 21727263 - 21727299
Alignment:
Q  401 catattttaattacaaggtggaggatagtgattagag 437  Q
    |||||||||||||||| ||||||||||||||||||||    
T  21727263 catattttaattacaaagtggaggatagtgattagag 21727299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 437
Target Start/End: Original strand, 21682680 - 21682719
Alignment:
Q  398 ttccatattttaattacaaggtggaggatagtgattagag 437  Q
    ||||||||||||||||||| ||||||||||| ||||||||    
T  21682680 ttccatattttaattacaaagtggaggatagggattagag 21682719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 151
Target Start/End: Original strand, 21657010 - 21657114
Alignment:
Q  50 aaaggagaaggagaacatagtttatcaatacgaaatgagtcacagttagagaca---ccctttcatcttcttgatcttcagcgtaatatcatcctcatta 146  Q
    |||||||| ||||||||||||  |||||||  | |||||||||| | |||||||   |||  |||||||||||||||||| || ||  ||||||||| ||    
T  21657010 aaaggagatggagaacatagtgcatcaatagcagatgagtcacaatcagagacaatacccactcatcttcttgatcttcaacggaaactcatcctcacta 21657109  T
Q  147 catct 151  Q
    |||||    
T  21657110 catct 21657114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 437
Target Start/End: Original strand, 21772815 - 21772911
Alignment:
Q  351 cataatttctatttgtggtatacta---acatgtgcccttagtgc--------gtactttccatattttaattacaaggtggaggatagtgattagag 437  Q
    |||||||||||||| ||||||| ||   |||||||||||||||||        ||| |||||||||||||||||||| ||||| ||||||||||||||    
T  21772815 cataatttctatttttggtatattatgaacatgtgcccttagtgcacatgttagtattttccatattttaattacaaagtgga-gatagtgattagag 21772911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 171
Target Start/End: Original strand, 21746077 - 21746200
Alignment:
Q  51 aaggagaaggagaacatagtttatcaatacgaaatgagtcacagttagagac---accctttcatcttcttgatcttcagcgtaatatcatcctcattac 147  Q
    |||||| ||||||||||| | ||||||||  |||||||||||| | ||||||   ||||  ||||||||||||||||| || |||  ||| ||||| |||    
T  21746077 aaggaggaggagaacataatgtatcaataacaaatgagtcacattcagagacaatacccactcatcttcttgatcttctgcataaactcaacctcactac 21746176  T
Q  148 atctataaccaaggtacaacacaa 171  Q
    ||| |   ||||||||||| ||||    
T  21746177 atccaagtccaaggtacaatacaa 21746200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 437
Target Start/End: Original strand, 21716734 - 21716773
Alignment:
Q  397 tttccatattttaattacaaggtggaggatagtgattagag 437  Q
    |||||||||||||||||||| ||||| ||||||||||||||    
T  21716734 tttccatattttaattacaaagtgga-gatagtgattagag 21716773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 25906 - 25968
Alignment:
Q  18 cagagaaggagaaggacatggttccaaaaagaaaaggagaaggagaacatagtttatcaatac 80  Q
    ||||||||||||||||||||| |||||| | ||| |||||||||||| ||||| |||||||||    
T  25906 cagagaaggagaaggacatgggtccaaagaaaaacggagaaggagaatatagtgtatcaatac 25968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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