View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11426_high_16 (Length: 437)
Name: NF11426_high_16
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11426_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 27328575 - 27328993
Alignment:
| Q |
1 |
cctaaaatttctagcttcggaataattatggttggttgcataggacgtgataattgcttttatatcaaacaactaacacataccaggcataacctagttt |
100 |
Q |
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| T |
27328575 |
cctaaaatttctagcttcgtaataattatggttggttgcataggacgtgataattgcttttatatcaaacaactagcacataccaggcataacctagttt |
27328674 |
T |
|
| Q |
101 |
aagtagaacatgaatttggtgttgtaccnnnnnnnttaaaagaacatgaatttggtggtttgatattgagggaccacctgctaaaacgcaggtgacataa |
200 |
Q |
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| T |
27328675 |
aagtagaacatgaatttggtgttgtaccaaaaaaaa-aaaagaacatgaatttggtggtttgatattgagggaccacctgctaaaacgcaggtgacataa |
27328773 |
T |
|
| Q |
201 |
aagcttgatccgatccaacatacttacatgcaaaattaggtcgtaaacaaataaatctcctggcctgtgtgacgtttcatcagctgtcacctgttctact |
300 |
Q |
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| T |
27328774 |
aagcttgatccgatccaacatacttacatgcaaaattaggtcgtaaacaaataaatctcctggcctgtgtgacgtttcatcagctgtcacctgttctact |
27328873 |
T |
|
| Q |
301 |
atgacaccatcacattatttgcatgccactaaaatagcaccacaaattcatttggagtttgttgctctaagaaaaaataaatgtattaaattaaagttag |
400 |
Q |
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| T |
27328874 |
atgacaccatcacattatttgcatgccactaaaatagcaccgcaaattcatttggagttggttgctctaagaaaaaataaatgtattatattaaagttag |
27328973 |
T |
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| Q |
401 |
ctcttgagcatattagtttg |
420 |
Q |
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| T |
27328974 |
ctcttgagcatattagtttg |
27328993 |
T |
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