View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11426_high_17 (Length: 434)
Name: NF11426_high_17
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11426_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 5e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 213 - 419
Target Start/End: Original strand, 36367758 - 36367964
Alignment:
| Q |
213 |
aattttatggaagttaccgcaacttctttaaattcattgtcaatttcaatatgcatttggactattctctcatactaagtaagattacatatacaattac |
312 |
Q |
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| T |
36367758 |
aattttatggaagttaccacaacttctttaaattcattgtcaatttcaatatgcatttggactattctctcatactaagtaagattacatatacaattac |
36367857 |
T |
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| Q |
313 |
aaaatcnnnnnnnnaaaacttaaagttggtagagtgtgtttggtttggtatttaatccaaactcacgtccaattgtgttattgtcgtggtttcatgaagc |
412 |
Q |
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| T |
36367858 |
aaaatctttttttttaaacttaaagttggtagagtgtgtttggtttggtatttaatccaaactcacgtccaattgtgttattgtcgtggtttcatgaagc |
36367957 |
T |
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| Q |
413 |
taataaa |
419 |
Q |
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||||||| |
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| T |
36367958 |
taataaa |
36367964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 36367618 - 36367736
Alignment:
| Q |
1 |
taacagagaaaattctttttattagaatttaatattatatacatcattgataagtgccatattnnnnnnnntgag-ttacattcattgcataatatcaac |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||| |
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| T |
36367618 |
taacagagaaaattctttttattagaatttaatattatatacatcattgataagtgccatattaaaaaaaatgagtttacattcattgc---atatcaac |
36367714 |
T |
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| Q |
100 |
ccaatcattcataagtgccata |
121 |
Q |
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| T |
36367715 |
ccaatcattcataagtgccata |
36367736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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