View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11426_high_25 (Length: 404)
Name: NF11426_high_25
Description: NF11426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11426_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 14)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 9349242 - 9348845
Alignment:
| Q |
1 |
aagtttgattattgagtaggtgattccacttgcttctttgaacagacatttgtgaactctactttctacaaagataacggagccttcgttgaactgacaa |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
9349242 |
aagtttgattattgagtaggtgattccactagcttctttgaacagacatttgtaaactctactttctacaaagataacggagccttctttgaaccgacaa |
9349143 |
T |
|
| Q |
101 |
agtagaagtagaagtattataatagtcagcttcaacaagttagcgcccgcctaccaaacccttttcagattaatagtcagctgcaacaaagtggaactga |
200 |
Q |
| |
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|||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9349142 |
agtagaagtagaagtattataacagttagcttcaacaagttagtgcccgcctaccaaacccttttcagattaatagtcagctgcaacaaagtggaactga |
9349043 |
T |
|
| Q |
201 |
ttaagcagaattcatcaatagagacttcgttgcatcttcgtcatcgattaagctagtagagccatcattttcagattcaatttcattagagttgatgtca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || || |
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| T |
9349042 |
ttaagcagaattcatcaatagagacttcgttgcatcttcgtcatcgattaaactagtagagccatcattttcagattcaatttcattagagtcgacttct |
9348943 |
T |
|
| Q |
301 |
aggtcttcctgaatcatttcgtttggatacaaagacggctttggaggcatttcaatattttcaatatttccttcaagcatctctatcactttgttcat |
398 |
Q |
| |
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||||||| |||||| |||| | |||||| | ||| |||||||||||||||||||||| ||||||| |||||| ||||||||||| ||||| ||||| |
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| T |
9348942 |
aggtcttactgaatattttcatctggataaagagaaggctttggaggcatttcaatatcctcaatatctccttcgagcatctctattactttattcat |
9348845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 189 - 398
Target Start/End: Complemental strand, 9318795 - 9318586
Alignment:
| Q |
189 |
aagtggaactgattaagcagaattcatcaatagagacttcgttgcatcttcgtcatcgattaagctagtagagccatcattttcagattcaatttcatta |
288 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
9318795 |
aagtggaactgattaagcagaattcatcaatagagactttgttgcatcttcgtcatcgattaaactagtagagccatcattttcagattcaatttcatta |
9318696 |
T |
|
| Q |
289 |
gagttgatgtcaaggtcttcctgaatcatttcgtttggatacaaagacggctttggaggcatttcaatattttcaatatttccttcaagcatctctatca |
388 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9318695 |
gagttgacgtcaaggtcttcctgaatcatttcatttggatacaaagagggctttggaggcatttcaatattttcaatatttccttcaagcatctctatca |
9318596 |
T |
|
| Q |
389 |
ctttgttcat |
398 |
Q |
| |
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|||||||||| |
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| T |
9318595 |
ctttgttcat |
9318586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 200 - 398
Target Start/End: Original strand, 9319518 - 9319716
Alignment:
| Q |
200 |
attaagcagaattcatcaatagagacttcgttgcatcttcgtcatcgattaagctagtagagccatcattttcagattcaatttcattagagttgatgtc |
299 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
9319518 |
attaagcagaattcatcaatagagactttgttgcatcttcgtcatcgattaaactagtagagccataattttcagattcaatttcattagagttgatgtc |
9319617 |
T |
|
| Q |
300 |
aaggtcttcctgaatcatttcgtttggatacaaagacggctttggaggcatttcaatattttcaatatttccttcaagcatctctatcactttgttcat |
398 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9319618 |
aaggtcttcctgaatcatttcatttggatacaaagagggctttggaggcatttcaatattttcaatatttccttcaagcatctctatcactttgttcat |
9319716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 204 - 398
Target Start/End: Original strand, 9349839 - 9350033
Alignment:
| Q |
204 |
agcagaattcatcaatagagacttcgttgcatcttcgtcatcgattaagctagtagagccatcattttcagattcaatttcattagagttgatgtcaagg |
303 |
Q |
| |
|
||||||||||| | ||||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9349839 |
agcagaattcaatattagagactttgttgcatcctcgtcgtcgattaaactagtagagccatcattttcagattcaatttcattagagttgatgtcaagg |
9349938 |
T |
|
| Q |
304 |
tcttcctgaatcatttcgtttggatacaaagacggctttggaggcatttcaatattttcaatatttccttcaagcatctctatcactttgttcat |
398 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9349939 |
tcttcctgaatcatttcatttggatacaaagagggctttggaggcatttcaatattttcaatatttccttcaagcatctctatcactttgttcat |
9350033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 9318906 - 9318792
Alignment:
| Q |
1 |
aagtttgattattgagtaggtgattccacttgcttctttgaacagacatttgtgaactctactttctacaaagataacggagccttcgttgaactgacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
9318906 |
aagtttgattattgagtaggtgattccactagcttctttgaacagacatttgtgaactctactttctacaaagataacggagccttctttgaactgacaa |
9318807 |
T |
|
| Q |
101 |
agtagaagtagaagt |
115 |
Q |
| |
|
||||||||||||||| |
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|
| T |
9318806 |
agtagaagtagaagt |
9318792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 281 - 398
Target Start/End: Complemental strand, 9255441 - 9255324
Alignment:
| Q |
281 |
tttcattagagttgatgtcaaggtcttcctgaatcatttcgtttggatacaaagacggctttggaggcatttcaatattttcaatatttccttcaagcat |
380 |
Q |
| |
|
|||||| |||||||| |||| ||| | ||||||||||| |||||||||| | ||||||||||||||||||| ||| ||||||| |||||||||||| |
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|
| T |
9255441 |
tttcatgagagttgacttcaatatctccatgaatcatttcatttggatacagtaaaggctttggaggcatttcaacattctcaatatctccttcaagcat |
9255342 |
T |
|
| Q |
381 |
ctctatcactttgttcat |
398 |
Q |
| |
|
|||||||||||| ||||| |
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|
| T |
9255341 |
ctctatcactttattcat |
9255324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 337 - 398
Target Start/End: Complemental strand, 9433197 - 9433136
Alignment:
| Q |
337 |
ggctttggaggcatttcaatattttcaatatttccttcaagcatctctatcactttgttcat |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
9433197 |
ggctttggaggcatttcaatattttcaatatctccttcaagcatctctactactttgttcat |
9433136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 337 - 398
Target Start/End: Complemental strand, 9486549 - 9486488
Alignment:
| Q |
337 |
ggctttggaggcatttcaatattttcaatatttccttcaagcatctctatcactttgttcat |
398 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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|
| T |
9486549 |
ggctttggaggtatttcaatattttcaatatctccttcaagcatctctactactttgttcat |
9486488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 337 - 398
Target Start/End: Complemental strand, 9454184 - 9454123
Alignment:
| Q |
337 |
ggctttggaggcatttcaatattttcaatatttccttcaagcatctctatcactttgttcat |
398 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||| ||||| |
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|
| T |
9454184 |
ggctttggaggcatttccatattttcaatatctccttcaagcatctctactacttttttcat |
9454123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 383
Target Start/End: Original strand, 9056289 - 9056360
Alignment:
| Q |
312 |
aatcatttcgtttggatacaaagacggctttggaggcatttcaatattttcaatatttccttcaagcatctc |
383 |
Q |
| |
|
||||||||| | ||||||||||| |||| | ||||||||||| |||||||||| ||||||||||||||| |
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|
| T |
9056289 |
aatcatttcatctggatacaaagttggctccgaaggcatttcaaggttttcaatatctccttcaagcatctc |
9056360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 386
Target Start/End: Original strand, 8955776 - 8955822
Alignment:
| Q |
340 |
tttggaggcatttcaatattttcaatatttccttcaagcatctctat |
386 |
Q |
| |
|
|||||||| |||||||||| |||||||| |||||||||||| ||||| |
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|
| T |
8955776 |
tttggaggaatttcaatatcttcaatatctccttcaagcatttctat |
8955822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 398
Target Start/End: Original strand, 9399385 - 9399443
Alignment:
| Q |
340 |
tttggaggcatttcaatattttcaatatttccttcaagcatctctatcactttgttcat |
398 |
Q |
| |
|
|||||||| ||||||| | ||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
9399385 |
tttggaggaatttcaaaactttcaatatccccttcaagcatctctactactttgttcat |
9399443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 8931851 - 8931900
Alignment:
| Q |
337 |
ggctttggaggcatttcaatattttcaatatttccttcaagcatctctat |
386 |
Q |
| |
|
||||||||||| |||||||| | |||||||| |||||||||||| ||||| |
|
|
| T |
8931851 |
ggctttggaggaatttcaatgtcttcaatatctccttcaagcatttctat |
8931900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 383
Target Start/End: Complemental strand, 9082891 - 9082850
Alignment:
| Q |
342 |
tggaggcatttcaatattttcaatatttccttcaagcatctc |
383 |
Q |
| |
|
|||||||||||||| | ||||||||| ||||||||||||||| |
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|
| T |
9082891 |
tggaggcatttcaagagtttcaatatctccttcaagcatctc |
9082850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 200 - 398
Target Start/End: Complemental strand, 15927687 - 15927492
Alignment:
| Q |
200 |
attaagcagaattcatcaatagagacttcgttgcatcttcgtcatcgattaagctagtagagccatcattttcagattcaatttcattagagttgatgtc |
299 |
Q |
| |
|
||||||||||||||||||| |||||||| |||| ||||| ||| || || ||| ||||||||||||||||||||||| ||||||||||||||| ||| |
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|
| T |
15927687 |
attaagcagaattcatcaacagagactttgttgtatcttattca---atgaaactaatagagccatcattttcagattcagtttcattagagttgacgtc |
15927591 |
T |
|
| Q |
300 |
aaggtcttcctgaatcatttcgtttggatacaaagacggctttggaggcatttcaatattttcaatatttccttcaagcatctctatcactttgttcat |
398 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||| ||| ||||||| |||||||||||||||||||||| ||||||| |
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|
| T |
15927590 |
aaggtcttcctcaatcatttcatttggatacaaagagggctttggaggcatttcaacattctcaatatctccttcaagcatctctatcactctgttcat |
15927492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 274 - 398
Target Start/End: Original strand, 9159282 - 9159406
Alignment:
| Q |
274 |
gattcaatttcattagagttgatgtcaaggtcttcctgaatcatttcgtttggatacaaagacggctttggaggcatttcaatattttcaatatttcctt |
373 |
Q |
| |
|
||||||||||||||||| |||| || |||||||||| ||| ||||| |||||| | ||||| || |||||||||||||||||||| ||||||||||||| |
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|
| T |
9159282 |
gattcaatttcattagacttgacttctaggtcttcctcaataatttcatttggacagaaagaaggttttggaggcatttcaatattctcaatatttcctt |
9159381 |
T |
|
| Q |
374 |
caagcatctctatcactttgttcat |
398 |
Q |
| |
|
| ||||||||||| ||||||||||| |
|
|
| T |
9159382 |
cgagcatctctattactttgttcat |
9159406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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